Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0111 ATGGGAAAAAGTGAAGCTGAGATGTCTTCTAAATCTGATAAAATATCCTCCTCTGCAGAGACCAACATCCATCTTCTCAACCCTGACTGGGCATCTATACAGGCATACTATGGATCTGGAGTCCCTCTTCTGGCACCACATTTCAACTCTGCAGTCCCGGGCAGTCATTTTCCTTATCCATATGTATGGGCTCCATCTCAGAGTTATTCTCCATCTGACACATTGATATCTCAGCCACTGATTCCACCTTATGGGGTGCCCTACACGGCAATCTACTCACATGAAGGTGTTCATGCACATCCTGCAGTTCCTCTTGTTGCAACTCCATTAAGCAAAAAAGCTCCTTCTAGATCATCAGTGGACATGGATCAAGGCGTTAGAAAGAAGTTTAAAAGATTGGATGGGCTGGCAGTACCTGTAGGCAATGTTAGCACTGAGGACGATGCCGGAGGCTCAGTCTATGAGGTGTCACAGAGTGTGAAACATGGTATTGATGGTTCTACTGATGGAAGTGATGGAAACACTGGAGCATTCCTACCCCAGAGGAATAGCGGTTCTGAGGGCATCCTTTCTACTGACAATGATGGGAACTTCCATAGGTTTGCTGGTTCCTTATCTGAAGGAGAAGCATATGCAGCTTCCCACAAGGTTTCTGTGAACTCTGTGGCCCCTACAAATGTTGCAGGAAAATCTGTCAGACCCCTTAATAGAAATGAAGAAATTCATGCAGCTTGTGTTGCTTCTAGCACTAGTGCAGGGTCACCTTTTGAAGTCTGTCAACAGGATGAACGGCAGCTGAAGCGAGAGAGGAGGAAACAGGCTAATAGAGAATCTGCTAAGAAGTCCAGGTTGAGGAAGCAGGCTGAAAATGAGGAACTGAGAATGAGATACGAAACCCTGAATGAGGAGAATAAGGCACTGAAGTTTGAAATAAGCAAGCTAACAGAGCATTTGGACAAAGTGAGGCTAGAAAATACTGCATTACGGGAGAAGCTGAAAAATAAACAGCAGCTTGAACTGCAAGGAGAGATGGCTCCATATAAGATTGAGGCTGATTTGATCCTTCCTGACAGTCCTGAGGAGGTATATAAGCTGAATGACTCCAACTCTCTTAACCAAAATGTGCAGATGGAATGTGGGATCCAAGAGAACCCAAATTCTGAAACCAAGCTCCATCAGTTATTGAAATCAAACTCTAGGACAGATGCAATTGTGGCAGGCTGA 1224 0.4485 MGKSEAEMSSKSDKISSSAETNIHLLNPDWASIQAYYGSGVPLLAPHFNSAVPGSHFPYPYVWAPSQSYSPSDTLISQPLIPPYGVPYTAIYSHEGVHAHPAVPLVATPLSKKAPSRSSVDMDQGVRKKFKRLDGLAVPVGNVSTEDDAGGSVYEVSQSVKHGIDGSTDGSDGNTGAFLPQRNSGSEGILSTDNDGNFHRFAGSLSEGEAYAASHKVSVNSVAPTNVAGKSVRPLNRNEEIHAACVASSTSAGSPFEVCQQDERQLKRERRKQANRESAKKSRLRKQAENEELRMRYETLNEENKALKFEISKLTEHLDKVRLENTALREKLKNKQQLELQGEMAPYKIEADLILPDSPEEVYKLNDSNSLNQNVQMECGIQENPNSETKLHQLLKSNSRTDAIVAG* 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0111 407 MobiDBLite consensus disorder prediction 165 192 - -
Vvi2g0111 407 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 270 285 IPR004827 GO:0003700|GO:0006355
Vvi2g0111 407 SUPERFAMILY Leucine zipper domain 266 320 IPR046347 GO:0003700|GO:0006355
Vvi2g0111 407 MobiDBLite consensus disorder prediction 268 288 - -
Vvi2g0111 407 Pfam bZIP transcription factor 263 325 IPR004827 GO:0003700|GO:0006355
Vvi2g0111 407 CDD bZIP_plant_GBF1 268 319 IPR045314 GO:0003700|GO:0006355
Vvi2g0111 407 PANTHER G-BOX-BINDING FACTOR 3-RELATED 1 383 IPR044827 GO:0003700|GO:0006355|GO:0043565
Vvi2g0111 407 SMART brlzneu 263 327 IPR004827 GO:0003700|GO:0006355
Vvi2g0111 407 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 265 328 IPR004827 GO:0003700|GO:0006355
Vvi2g0111 407 Coils Coil 271 338 - -
Vvi2g0111 407 Gene3D - 257 325 - -
Vvi2g0111 407 Pfam G-box binding protein MFMR 1 104 IPR012900 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0111 Vvi-Chr2 990820 995989 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0111 1 407 bZIP Transcription Factor Family AT2G46270 34.579 1.11e-57 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vvi2g0111 MFMR 3.6e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0111 K09060 - vvi:100257104 792.727