Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0108 ATGGGTGAGACTCTCCGGACTGTTTTCTGTGGAAGCTCCGGATGTTGGAGTAAAATTGGAAAGATATGCAGTTCTGGGTTCCTAGCCATCATCTGTCCATGTTCATGTCTCAATCATATTTTGGTCATTTCTGTTGACATCATCCTCTTGTTCTTCTTATTATTGATCCTCATATATAAACCATCAGCTACGAAGATCTTATCCCCTCAACAGTCTCTAAGCTTTTCCACAATGCTAAATTATGCGGCCTTTCTTAATGGTAGTTTGGGGTTGGTTTATCTGGGTTTGGGGTTCTGGATTGTGGGAGAGAAGCTGATTGAAGAGAACACCATTCTACATTTGCATGGTTGGTTAATGGTTTTATTACAAGGCTTCACCTGGTTTTTTCTGGGTTTAGCTGTGAGGTTTAAAAGGCATCAACTTCCACATATTGCAGGGCTGAGGCTCTGTTCAGTACTTGCATTCTTTATTGCAGGTTTTCACTGCGTTACATCTTTCTGGGAAGCTATTGTGGGTGATGCAGTATCATTCAAGATGATTTTAGATGTCATGTCTTTTCCCGGAGCGATTCTATTGATGTTCTGCACTTTTTCGGGACCAAAATATGCCGGAGCTGATTCAGAAATTGATGGTGCTGCCTTCTACGCACCTTTGCCTGGTGAAGGAGGCAGTGGTGGTGATAAAATCAATTCAGATGCCAGCTTACCTCCTTTCGAGAAGGCGGGGCTTATTAGTAGACTGTCATTTTGGTGGTTGAATTCGTTGATGAAGAAGGGTAAGGAGAAAACTCTTGAGGACAAAGACATTCCACAACTAAGAAGGGAAGATCGAGCGGAAATGTGTTACTTGATGTTCATAGAACAGCAGAACAAGCAGAAAAAGAAGCAGTCACTCGACTCTCCTTCCATTTTGTCGACTATATTGTTGTGGCAGTGGAAACAGATTTTGATTTCTGGCTTCTTTGCATTGATGAAGGTGCTAACACTTTCTATTGGGCCTCTGTTTCTTAGAGCCTTCATCCTGGTTGCTGAAGGCAAAGAAGCTTTTAAGTATGAAGGTTTCGCACTGACAGGAGGGCTCTTCCTTACTAAATGCTTAGAATCGTTATCAGAGAGGCAATGGTTCTTTCGAACTAGATTGATTGGGCTCCAAGTGAGATCGTTTCTATCTGCAGCCATCTATCAGAAGCAGCTTAAACTCTCGAACCCTGCAAAGGGGTTGTATTCCCCTGCTCAGATCGTGAGCTTTGTTACTATTGATGCTTACAAAATAGGTGAATACCCGTATTGGTTTCACCAGATATGGTCAACGAGCCTCCAGTTGTGTCTGGCATTGCTTATTATTTACTATTCGGTGGGGCTTGCAACTATAGCAGCTCTGTTTGTAGTAATATTGACAGTAGTTGTAAACTCTCCTGTGGGAAGGTTACAACATAAGTACCAGAAAATGCTCATGGGAACACAGGACAAGAGGCTGAAGGCTTTCACCGAGGCACTTACAAACATGAAAATTCTGAAGCTGTATGCTTGGGAGACTCATTTCAAGAATGTCATAGAACGGTTAAGGAAAGAGGAATTCAAGTGGTTATTGTCAGTTTTGTCACAGAAAGGGTACATTGTGATTCTGTTTTGGTCATCTCCCATTGTAGTATCAGCTGTTACTTATTGGGCATGCTACTTTCTTGGAACTACTCTCTCTGCTAGCAATGTTTTCACATTTATGGCAAGTTTAAGCATTGCCCAGGAGTCAATTAGGTTAATCCCTGATGTCATTTCAGCATTCATTGAGGCCAAGATTTCGTTAGATCGGATTGCAAAGTTTCTTGATGCACCAGAGCTGCAGAACAAACATGTAAGGAAGATGGGTGATGGGAAGCAGCTCGAGGAATCCATTTTTATCAAGAGCAACAGAATTTCATGGGAGGATAACTCTACAAGGGCTACGCTAAGGAACATAAATTTGGTGGTTAAGCCTGGGGAAAAGGTAGCTATTTGTGGAGAGGTTGGCTCAGGTAAATCAACACTATTAGCTGCACTTCTTGGAGAAGTTCCACACGTTGATGGCATAGTTCGAGTCTATGGAAAGATTGCTTACGTCTCCCAGACAGCATGGATTCCAACAGGGACCATACAAGAAAATATTTTGTTTGGGTCTGCTATGGATCCTTACAGATACAGAGAGGCTATTGAGAAGTGTGCCCTAGTGAAGGACCTTGAGATGCTTCCATTCGGCGATCTCACTGAAATAGGAGAAAGAGGTGTTAATCTGAGTGGTGGACAGAAGCAGCGGGTTCAACTGGCACGTGCATTATATCAGGATGCAGATGTGTATCTCCTGGATGATCCATTTAGTGCGGTTGATGCCCATACTGCAACCAATCTATTTAATGAATATGTCATGGGAGCTCTATCAATGAAGACGGTCATACTTGTGACCCACCAAGTGGACTTCCTCCCTGCATTCGATTTGGTTTTGTTAATGTCCGAAGGGGAGATCCTGCAAGCTGCTACCTATGACCAGCTGATGCACTCTAGTCAAGAGTTCCAGGACCTTGTCAATGCACACAATGCCATGGTTGGTTCTGAGAGGCAACCTGAGCACGATTCTACCCAGAAATCTAAAATTCGGAAGGGAGAGATACAGAAGATTTACACTGAAAAACAGTTAAGAGAAACATCCGGAGAACAGTTAATTAAGAAAGAAGAAAGAGAAATGGGAGACACTGGTCTGAAGCCTTACCTACAGTACTTGGAATACAGCAAGGGATTCTTGTACTTCTTTTTGTCAACTCTATCTCATGTCATATTCGTTGTTGGGCAGTTGGTGCAAAACTATTGGTTGGCTGCAAATGTCCAGAATTTTAGTGTTAGCCAATTGAAACTGATTGCAGTATACACAGGGATCGGATTAAGTTTGTCATTCTTTTCGTCGCTCCGGTCTTTTTTCGTTGTTCTTTTAGGCCTTGGGGCATCGCAGTCTATTTTTTCTACACTGCTGAGCTCTTTTTTTCGAGCACCAATGTCCTTTTATGACTCAACACCTCTGGGAAGGATACTCAGTCGGGTATCCTCTGATTTGAGTGTGGTTGACCTTGATGTGGCCTTCAAATTTAGTTTTGCTGTTGGGGCAGCTATTAATACTTATGCCAGTTTTGGAGTGTTGGCTATTCTTGCCTGGGAATTTGTGTTTGTCATTTTACCAACAATTTATCTTAGTATACTCATCCAGAGGTACTACCTTGCTACTGGAAAAGAGTTGATGCGAATCAATGGCACAACTAAGTCTTTCGTTGCAAGCCATCTTGCTGAGTCCATTGCTGGTGCTATGACAATTAGAGCTTTCGGGGAGGAAGATAGACACTTTTCAAAGAATTTGGACTTCATTGACATAAATGCAAGTCCATTCTTCTATAATTTCACAGCAAATGAGTGGTTGATCCAACGCCTTGAAATACTATGTGCAATCGTTCTCTCATCTTCAGCCCTTGCCCTAACTTCTCTTCATACGAGTGCTTCTAAATCTGGATTTATTGGAATGGCATTATCGTATGGTCTTTCAATGAATGTATTCCTTGTGTTTTCCGTCCAAAACCAGTGCCATTTAGCAAATATGATTGTTTCTGTTGAAAGATTAGAACAGTACACGAATATTCCTAGCGAAGCCCCAGAAGTCATAGAGAGTAATCGACCACCAGTCAGTTGGCCTGCTATTGGTGAAGTGGAAATTTATGATTTGAAGGTCAGGTATAGGCTCAATGCTCCTCTAGTTCTTCAAGGAATTAGTTGCAAATTTGGAGGAGGACAGAAAATTGGGATCGTTGGCCGGACTGGTAGTGGAAAGACAACTCTTATCAGCGCTTTGTTTCGTTTGGTAGAGCCTACAGAGGGACAGATAATTATAGATGGCATAAATATTTCCACAATTGGGCTACATGATCTCAGATCACGTCTTGGGATCATTCCACAAGAACCAACTCTTTTTAGCGGGTCTATAAGATGCAATCTTGACCCTTTATCACTGCATACTGATGAAGAAATATGGGAGGTTCTGGAAAAATGTCAACTTCGAGGGGCTGTTCAAGAGAAAAAAGAGGGCCTGGACTCCTTAGTTGTACTAGACGGATCAAATTGGAGCATGGGCCAGAGACAATTATTCTGTTTGGGACGTGCTCTACTGAAGAGAAGTCGGATACTAGTGCTTGATGAAGCCACTGCATCTATAGACAATGCAACAGACTCCATTCTCCAGAAGACCATAAGAACAGAATTTGCAGACTGCACTGTAATAACAGTAGCCCACAGAATCCCAACTGTGATGGACTGCACAATGGTGCTTGCTATCAGTGATGGAAAATTGGTAGAGTACGATGAGCCGATGAAGCTGATAAAGAAGGAGGGATCGCTGTTTGGGCAGCTTGTCAAGGAGTACTGGTCTCACTCTTCAAATGGCAGTAACACCTCGGGAGATTGGCTCTGA 4476 0.4256 MGETLRTVFCGSSGCWSKIGKICSSGFLAIICPCSCLNHILVISVDIILLFFLLLILIYKPSATKILSPQQSLSFSTMLNYAAFLNGSLGLVYLGLGFWIVGEKLIEENTILHLHGWLMVLLQGFTWFFLGLAVRFKRHQLPHIAGLRLCSVLAFFIAGFHCVTSFWEAIVGDAVSFKMILDVMSFPGAILLMFCTFSGPKYAGADSEIDGAAFYAPLPGEGGSGGDKINSDASLPPFEKAGLISRLSFWWLNSLMKKGKEKTLEDKDIPQLRREDRAEMCYLMFIEQQNKQKKKQSLDSPSILSTILLWQWKQILISGFFALMKVLTLSIGPLFLRAFILVAEGKEAFKYEGFALTGGLFLTKCLESLSERQWFFRTRLIGLQVRSFLSAAIYQKQLKLSNPAKGLYSPAQIVSFVTIDAYKIGEYPYWFHQIWSTSLQLCLALLIIYYSVGLATIAALFVVILTVVVNSPVGRLQHKYQKMLMGTQDKRLKAFTEALTNMKILKLYAWETHFKNVIERLRKEEFKWLLSVLSQKGYIVILFWSSPIVVSAVTYWACYFLGTTLSASNVFTFMASLSIAQESIRLIPDVISAFIEAKISLDRIAKFLDAPELQNKHVRKMGDGKQLEESIFIKSNRISWEDNSTRATLRNINLVVKPGEKVAICGEVGSGKSTLLAALLGEVPHVDGIVRVYGKIAYVSQTAWIPTGTIQENILFGSAMDPYRYREAIEKCALVKDLEMLPFGDLTEIGERGVNLSGGQKQRVQLARALYQDADVYLLDDPFSAVDAHTATNLFNEYVMGALSMKTVILVTHQVDFLPAFDLVLLMSEGEILQAATYDQLMHSSQEFQDLVNAHNAMVGSERQPEHDSTQKSKIRKGEIQKIYTEKQLRETSGEQLIKKEEREMGDTGLKPYLQYLEYSKGFLYFFLSTLSHVIFVVGQLVQNYWLAANVQNFSVSQLKLIAVYTGIGLSLSFFSSLRSFFVVLLGLGASQSIFSTLLSSFFRAPMSFYDSTPLGRILSRVSSDLSVVDLDVAFKFSFAVGAAINTYASFGVLAILAWEFVFVILPTIYLSILIQRYYLATGKELMRINGTTKSFVASHLAESIAGAMTIRAFGEEDRHFSKNLDFIDINASPFFYNFTANEWLIQRLEILCAIVLSSSALALTSLHTSASKSGFIGMALSYGLSMNVFLVFSVQNQCHLANMIVSVERLEQYTNIPSEAPEVIESNRPPVSWPAIGEVEIYDLKVRYRLNAPLVLQGISCKFGGGQKIGIVGRTGSGKTTLISALFRLVEPTEGQIIIDGINISTIGLHDLRSRLGIIPQEPTLFSGSIRCNLDPLSLHTDEEIWEVLEKCQLRGAVQEKKEGLDSLVVLDGSNWSMGQRQLFCLGRALLKRSRILVLDEATASIDNATDSILQKTIRTEFADCTVITVAHRIPTVMDCTMVLAISDGKLVEYDEPMKLIKKEGSLFGQLVKEYWSHSSNGSNTSGDWL* 1492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0108 1491 Gene3D - 637 885 IPR027417 -
Vvi2g0108 1491 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 316 596 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vvi2g0108 1491 Pfam ABC transporter 1257 1405 IPR003439 GO:0005524
Vvi2g0108 1491 Gene3D - 1224 1475 IPR027417 -
Vvi2g0108 1491 CDD ABCC_MRP_domain2 1238 1458 - -
Vvi2g0108 1491 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 934 1157 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vvi2g0108 1491 SMART AAA_5 1266 1458 IPR003593 GO:0016887
Vvi2g0108 1491 SMART AAA_5 658 831 IPR003593 GO:0016887
Vvi2g0108 1491 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 238 1477 - -
Vvi2g0108 1491 FunFam ABC transporter C family member 3 1223 1475 - -
Vvi2g0108 1491 CDD ABCC_MRP_domain1 638 831 - -
Vvi2g0108 1491 Gene3D ABC transporter type 1, transmembrane domain 286 613 IPR036640 GO:0005524|GO:0016020
Vvi2g0108 1491 Gene3D ABC transporter type 1, transmembrane domain 887 1221 IPR036640 GO:0005524|GO:0016020
Vvi2g0108 1491 SUPERFAMILY ABC transporter transmembrane region 306 612 IPR036640 GO:0005524|GO:0016020
Vvi2g0108 1491 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 629 854 IPR027417 -
Vvi2g0108 1491 CDD ABC_6TM_ABCC_D1 317 604 IPR044746 GO:0140359
Vvi2g0108 1491 ProSitePatterns ABC transporters family signature. 756 770 IPR017871 GO:0005524|GO:0016887
Vvi2g0108 1491 Pfam ABC transporter 649 783 IPR003439 GO:0005524
Vvi2g0108 1491 SUPERFAMILY ABC transporter transmembrane region 924 1220 IPR036640 GO:0005524|GO:0016020
Vvi2g0108 1491 FunFam ABC transporter C family member 5 889 1221 - -
Vvi2g0108 1491 Pfam ABC transporter transmembrane region 316 580 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vvi2g0108 1491 Pfam ABC transporter transmembrane region 923 1169 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vvi2g0108 1491 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1230 1467 IPR027417 -
Vvi2g0108 1491 FunFam ABC transporter C family member 10 613 867 - -
Vvi2g0108 1491 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1240 1474 IPR003439 GO:0005524
Vvi2g0108 1491 FunFam ABC transporter C family member 10 299 612 - -
Vvi2g0108 1491 CDD ABC_6TM_ABCC_D2 922 1215 IPR044726 GO:0140359
Vvi2g0108 1491 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 633 854 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0108 Vvi-Chr2 953146 960480 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0108 573 844 Calmodulin-binding Proteins AT2G36910 27.682 9.71e-21 97.8