Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0107 ATGTTGAGGGTAAGTCATACCAAAACCCAAGTTACATCAAAACTAATAAAGGTTAAACTCAAATCACGTTTTACCTGTGTTACATCTTTCTGGGAAGCTATTGTGGGCGATGCAGTATCAGTTAAGGTGATTTTAGATGTTATATCTTTTCCTGGAGCGATTCTATTGATGTTCTGCACTTTCTCGGAACCAAAATATGCAGGAACTGATTCAGGATTTGATGGTGCTGCCTTCTATACACCTTTGCCAGGCGAAGGAGGCAGTGGTGGTGATAAAATCAATACAGATGCCAGCTTACCTCCTTTTGAGAAAGCTGGGCTTATTAGTAGACTGTCATTTTGGTGGTTGAATTCGTTGATGAAGAAAGGTAAGCAGAAAACTCTCGAGGACAAAGACATTCCACAGCTAAGAAGGGAAGATCGAGCGGAAATGTGTTACTTAATGTTCATGGAACAGCAGAACAAGCAGAAAAAGCAGTCATCTGACTCCCCTTCCATTTTGTCGACTATATTGTTGTGGCAACGGAAACAGATTTTGATTTCTGGCTTCTTTGCATTGATGAAGGTGCTAACACTTTCTACTGGCCCTCTGTTTCTTAGAGCCTTCATCCTGGTTGCTGAAGGCAGAGAAGCTTTTAAGTACGAAGGTTATGCACTGACAGGAGGGCTCTTTCTTATTAAATGCTTAGAATCGTTATCAGAGAGGCAATGGTTCTTTCGAACTAGATTGATTGGGCTCCAAGTGAGATCGTTTCTATCTGCAGCCATCTATCAGAAGCAGCTTAAGCTCTCAAATGCTGCAAAGGGGTCATATTCCCCTGGTCAGATCATAAACTTTGTTACTATTGATGCTTACAACATAGGTGAATACCCGTACTGGTTTCACCAGATCTGGTCAACAAGCGTCCAGTTGTGTCTGGCATTGATTATTATTTACTATTCGGTGGGGCTTGCAACTATAGCAGCTCTGTTTGTAGTAATATTGACTGTTGTTGCAAACTCTCCTATGGGAAGGTTACAACATAAGTACCAGAAAATGCTCATGGGAACACAGGACAAGAGGCTGAAGGCTTTTGCAGAGGCACTTACAAACATGAAAAGTCTGAAGCTGTATGCTTGGGAGACTCATTTCAAGAATGTCATAGAACGGTTAAGGAAAGAGGAATTCAAGTGGTTATTGTCAGTTCTGTCACAGAAAGGGTACAATCTGATTCTGTTTTGGTCATCTCCCATTGTAGTATCAGCTGTTACTTTCTGGGCATGCTACTTTCTTGGAACTACTCTCTCTGCTAGCAATGTTTTCACATTTATGGCAAGTTTGTGCATTGCCCAGGAGCCAATTAGGTTAATCCCTGATGTCATTTCAGCATTCATTGAGGCCATGGTTTCGTTAGATCGGATTGCAAAGTTTCTTGATGCACCAGAGCTGCAGAACAAACATGTAAGGAAGATGTGTGATGGGATGGAGCTCGCAGAATCCGTTTTTATCAAGAGCAAAAGAATTTCATGGGAGGATAACTCTACAAGGGCTACTCTACGAAACATAAATTTGGTGGTTAAGCCTGGGGAAAAGGTAGCTATTTGTGGAGAGGTTGGCTCAGGTAAATCGACACTATTAGCTGCTATTCTTGGAGAAGTTCCACACGTTAATGGCATAGTTCGAGTTTATGGGAAGATTGCTTACGTCTCTCAGACAGCATGGATTCCAACAGGGACAATACAAGAAAATATTCTGTTTGGGTCTGCTATGGATCCTTACAGATACAGAGAGGCTATTGAGAAGTGTGCCCTAGTGAAGGACCTTGAGATGCTTCCATTCGGTGATCTCACTGAAATAGGAGAAAGAGGTGTTAATCTGAGTGGTGGACAGAAACAGCGGGTTCAACTTGCACGTGCTTTATATCGGGATGCAGATGTATATCTCCTGGATGATCCATTTAGTGCGGTTGATGCACATACTGCAACCAATCTATTTAATGAATATGTCATGGGAGCTCTATCAATGAAGACAGTCATACTTGTGACCCACCAAGTGGACTTCCTCCCTGCATTCGATTCGGTTTTGTTAATGTCCGAAGGGGAGATCCTGCAAGCTGCTACCTTTGACCAGCTGATGCACTCTAGTCAAGAGTTCCAGGACCTTATCATTGCACACAATGCCACAGTTGGTTCTGAGAGGCAACCTGAGCATGATTCTACCCAGAAGTCTAAAATTCCGAAGGGAGAGATACAAAAGATTGACAGCGAAAAACAGTTAAGAGATTCATTAGGAGAACAGTTAATTAAGAAAGAAGAAAGAGAAACGGGAGACACTGGTCTGAAGCCTTACCTACAATACTTGAAATATAGCAAGGGATTGTTCTACTTCTTTTTGGCAAATCTATCTCATATCATATTCATTGTTGCGCAGTTGGTGCAAAACTATTGGTTGGCTGCAAATGTCCAGAATCCTAGTGTTAGCCAATTGAAACTGATTGCAGTATACACAGGGATTGGATTAAGCTTATCAATATTTTTGTTGCTCCGATCATTTTTTGTTGTTGTTGTAGGCCTTGGGGCATCGCAATCTATTTTTTCTACACTGCTGAGCTCCCTTTTTCGAGCACCAATGTCCTTTTATGACTCGACACCTCTGGGAAGGATACTCAGTCGGGTATCTTCTGATTTAAGTGTGGTTGACCTTGATATGGCCTTCAAATTTACTTTTGCTATTGGGGCAGCTGTGACTACTTATGCCAGTTTTGGAGTATTGGCTATTCTTGCCTGGGAACTTGTGTTTGTCATTTTACCAACAATTTATCTTAGTATACTCATCCAGAGGTACTACTTTGCTGCTGGAAAAGAATTGATGCGAATCAATGGCACGACGAAGTCCTTTGTTGCAAGCCATCTTGCTGAGTCCATTGCCGGTGCTATGACAATTAGAGCTTTCGGGGAGGAAGATAGACACTTTTCAAAGAATTTGGACTTCATTGACATAAATGCAAGTCCATTCTTCTACAGTTTCACAGCAAATGAGTGGTTGATCCAACGCCTTGAAATACTATGTGCTATCGTTCTCTCATCTTCAGCCCTTGCCCTAACATTGCTTCATACGAGTTCTTCTAAATCTGGATTTATTGGAATGGCATTATCGTATGGCCTTTCAGTGAATGTATTCTTCGTATTTTCTGCCCAAAGCCAGTGCCTTTTAGCAAATATGATTGTTTCTGTTGAAAGATTAGAACAGTACATGAATATTCCTAGCGAAGCCCCTGAAGTCATAGGGAGTAATCGACCGCCACCCAGTTGGCCTACTATTGGTGAAGTGGAAATTTATGATTTGAAGGTCAAGTATCGGCCCAATGCTCCTCTAGTTCTTCAAGGAATCAGTTGCAAATTTGGAGGAGGACAGAAAATTGGGATCGTTGGCCGGACTGGTAGTGGAAAGACAACTCTTATCAGCGCTTTGTTTCGCTTGGTAGAGCCTACAGAGGGACAGATAATTATAGATGGCATAAATATTTCCACAATTGGGCTTCATGATCTCAGATCACGTCTTGGGATCATTCCACAAGAACCAACTCTGTTTAGCGGGTCTATAAGATACAATCTTGACCCTTTATCGCTGCATACTGATGAGGAAATATGGGAGGTTCTGGGAAAATGTCAACTTCGAGGGGCTGTTCAAGAGAAAGAAGAGGGCCTGGACTCCTTAGTTGTACATGACGGATCAAATTGGAGCATGGGCCAGCGACAATTATTCTGCTTGGGACGTGCCCTACTGAAGAGAAGTCGGATACTAGTGCTTGATGAAGCCACTGCATCTATAGACAATGCAACAGACTCCATTCTCCAGAAGACCATAAGAACAGAATTTGCAGACTGCACTGTAATTACAGTAGCCCACAGAATCCCAACCGTGATGGACTGCACAATGGTGCTTGCTATCAGTGACGGAAAATTAGTAGAGTACGATGTGCCAATGAAACTGATAAAGAAGGAGGGATCGCTGTTTGGGCAGCTTGTCACGGAGTACTGGTCTCGATCTTCAAATGGCAGTAACGCCTCAGGAGATTGGCTCTGA 4065 0.4246 MLRVSHTKTQVTSKLIKVKLKSRFTCVTSFWEAIVGDAVSVKVILDVISFPGAILLMFCTFSEPKYAGTDSGFDGAAFYTPLPGEGGSGGDKINTDASLPPFEKAGLISRLSFWWLNSLMKKGKQKTLEDKDIPQLRREDRAEMCYLMFMEQQNKQKKQSSDSPSILSTILLWQRKQILISGFFALMKVLTLSTGPLFLRAFILVAEGREAFKYEGYALTGGLFLIKCLESLSERQWFFRTRLIGLQVRSFLSAAIYQKQLKLSNAAKGSYSPGQIINFVTIDAYNIGEYPYWFHQIWSTSVQLCLALIIIYYSVGLATIAALFVVILTVVANSPMGRLQHKYQKMLMGTQDKRLKAFAEALTNMKSLKLYAWETHFKNVIERLRKEEFKWLLSVLSQKGYNLILFWSSPIVVSAVTFWACYFLGTTLSASNVFTFMASLCIAQEPIRLIPDVISAFIEAMVSLDRIAKFLDAPELQNKHVRKMCDGMELAESVFIKSKRISWEDNSTRATLRNINLVVKPGEKVAICGEVGSGKSTLLAAILGEVPHVNGIVRVYGKIAYVSQTAWIPTGTIQENILFGSAMDPYRYREAIEKCALVKDLEMLPFGDLTEIGERGVNLSGGQKQRVQLARALYRDADVYLLDDPFSAVDAHTATNLFNEYVMGALSMKTVILVTHQVDFLPAFDSVLLMSEGEILQAATFDQLMHSSQEFQDLIIAHNATVGSERQPEHDSTQKSKIPKGEIQKIDSEKQLRDSLGEQLIKKEERETGDTGLKPYLQYLKYSKGLFYFFLANLSHIIFIVAQLVQNYWLAANVQNPSVSQLKLIAVYTGIGLSLSIFLLLRSFFVVVVGLGASQSIFSTLLSSLFRAPMSFYDSTPLGRILSRVSSDLSVVDLDMAFKFTFAIGAAVTTYASFGVLAILAWELVFVILPTIYLSILIQRYYFAAGKELMRINGTTKSFVASHLAESIAGAMTIRAFGEEDRHFSKNLDFIDINASPFFYSFTANEWLIQRLEILCAIVLSSSALALTLLHTSSSKSGFIGMALSYGLSVNVFFVFSAQSQCLLANMIVSVERLEQYMNIPSEAPEVIGSNRPPPSWPTIGEVEIYDLKVKYRPNAPLVLQGISCKFGGGQKIGIVGRTGSGKTTLISALFRLVEPTEGQIIIDGINISTIGLHDLRSRLGIIPQEPTLFSGSIRYNLDPLSLHTDEEIWEVLGKCQLRGAVQEKEEGLDSLVVHDGSNWSMGQRQLFCLGRALLKRSRILVLDEATASIDNATDSILQKTIRTEFADCTVITVAHRIPTVMDCTMVLAISDGKLVEYDVPMKLIKKEGSLFGQLVTEYWSRSSNGSNASGDWL* 1355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0107 1354 CDD ABC_6TM_ABCC_D1 180 467 IPR044746 GO:0140359
Vvi2g0107 1354 FunFam ABC transporter C family member 10 476 730 - -
Vvi2g0107 1354 SUPERFAMILY ABC transporter transmembrane region 775 1083 IPR036640 GO:0005524|GO:0016020
Vvi2g0107 1354 FunFam ABC transporter C family member 10 162 475 - -
Vvi2g0107 1354 CDD ABC_6TM_ABCC_D2 785 1078 IPR044726 GO:0140359
Vvi2g0107 1354 SUPERFAMILY ABC transporter transmembrane region 170 475 IPR036640 GO:0005524|GO:0016020
Vvi2g0107 1354 Gene3D ABC transporter type 1, transmembrane domain 751 1084 IPR036640 GO:0005524|GO:0016020
Vvi2g0107 1354 Gene3D ABC transporter type 1, transmembrane domain 149 471 IPR036640 GO:0005524|GO:0016020
Vvi2g0107 1354 Pfam ABC transporter 1120 1268 IPR003439 GO:0005524
Vvi2g0107 1354 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 797 1073 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vvi2g0107 1354 Pfam ABC transporter transmembrane region 179 440 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vvi2g0107 1354 Pfam ABC transporter transmembrane region 787 1033 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vvi2g0107 1354 CDD ABCC_MRP_domain2 1101 1321 - -
Vvi2g0107 1354 Gene3D - 472 742 IPR027417 -
Vvi2g0107 1354 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 493 715 IPR027417 -
Vvi2g0107 1354 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1103 1337 IPR003439 GO:0005524
Vvi2g0107 1354 SMART AAA_5 521 694 IPR003593 GO:0016887
Vvi2g0107 1354 SMART AAA_5 1129 1321 IPR003593 GO:0016887
Vvi2g0107 1354 FunFam ABC transporter C family member 5 752 1084 - -
Vvi2g0107 1354 Pfam ABC transporter 512 646 IPR003439 GO:0005524
Vvi2g0107 1354 Gene3D - 1087 1338 IPR027417 -
Vvi2g0107 1354 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 179 459 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vvi2g0107 1354 FunFam ABC transporter C family member 3 1086 1338 - -
Vvi2g0107 1354 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1093 1330 IPR027417 -
Vvi2g0107 1354 CDD ABCC_MRP_domain1 501 694 - -
Vvi2g0107 1354 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 496 717 IPR003439 GO:0005524
Vvi2g0107 1354 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 102 1340 - -
Vvi2g0107 1354 ProSitePatterns ABC transporters family signature. 619 633 IPR017871 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0107 Vvi-Chr2 933403 947137 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0107 436 707 Calmodulin-binding Proteins AT2G36910 28.866 7.16e-20 94.7