Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0106 ATGGGTGAGAGTCTCTGGACTGTTTTCTGTGGAAGTTCCTGGTGTTGGAGTAAAATTGGAAAGATATGCAGTTCTGGGTTCCTAGCCATCGTCTGTCCATGTTCATGTCTCAATCATATTTTGGTCATTTCTGTTGACATCATCGTCTTGCTCTACTTATTATTTATCTTCATATATAAAGCATCAGCTATGAAGATCTTATCCCCTCAACAGTCTAGATGCTTTTCCACAATGCTAAATTCTGCTGCCTTTCTTAATGGTAGTTTAGGGTTGGTTTATCTCGGTTTGGGGTTCTGGATTGTGGGAGAGAAGCTGAGTGAAGAGAACACCATTCTACCTCTGCATGGCTGGCTAGTGGTCTTATTACAAGGCTTCACCTGGTTTTTTCTGGGTTTAGCTGTGAGGTTTAAGAGGCATCAACTTCTACATAATGCAGGGCTGAGGCTCTGTTCAGTACTTGCATTCTTTATCGCAGGTTTTCCCTGTGTTACATCTTTCTGGGAAGCTATTGTGGGCGATGCAGTATCAGTTAAGGTGATTTTAGATGTTATATCTTTTCCTGGAGCGATTCTATTGATGTTCTGCACTTTTACGGGACCAAAATATGCAGGAACTGATTCAGGATTTGATGGTGCTGCCTTCTATAGACCTTTGCCAGGTGAAGGAAGCAGTGCTGGTGATAAAATCAATACAGATGCCAGCTTACCCCCTTTTGAGAAAGCTGGGCTTATTAGTAGAATGTCATTTTGGTGGTTGAATTCGTTGATGAAGAAAGGTAAGCAGAAAACTCTCGAGGACAAAGACATTCCACAGCTAAGAAGGGAAGATCGAGCGGAAATGTGTTACTTAATGTTCATGGAACAGCAGAACAAGCAGAAACAGCAGTCATCTGACTCTCCTTCCATTTTGTCGACTATATTATTGTGGCAGTGGAAACAGATTTTGATTTCTGGCTTCTTTGCATTGATGAAGGTGCTAACACTTTCTACTGGCCCTCTGTTTCTTAGAGCCTTCATCCTGGTTGCTGAAGGCAAAGAAGCTTTTAAGTATGAAGGTTATGCACTGACGGGAGGGCTCTTCCTTACTAAATGCTTAGAATCGTTATCAGAGAGGCAGTGGTTCTTTCGAACTAGATTGATTGGGCTCCAAGTGAGATCGTTTCTATCTGCAGCCATCTATCAGAAGCAGCTTAAGCTCTCAAACACTGCAAAGGGGTTGTATTCCCCTGCTCAGATCGTGAGCTTTGTTATTATTGATGCTTACAATATAGGTGAATTCCCGTACTGGTTTCACCAGATCTGGTCAACAAGCCTCCAGTTGTGTCTGGCATTGATTATTATTTACTATTCGTTGGGGCTTGCAACTATAGCAGCTCTGTTTGTAGTAATATTGACTGTAGTTGCAAACTCTCCCATGGGAAGGTTACAACACAAGTACCAGAAAATGCTCATGGGAACTCAGGACAAGAGGCTGAAGGCTTTCACAGAGGCACTTACAAACATGAAAAGCCTGAAGCTGTACGCTTGGGAGACTCATTTCAAGAATGTCATAGAAAGGTTAAGGAAAGAGGAGTTCAAGTGGTTAGTGTCAGTTCTGTCACAGAAAGGGTACAGTCTGATTCTGTTTTGGTCATCTCCCATTGTAGTATCAGCCATTACTTTCACGGCATGCTACTTTATTGGAACTACTCTCTCTGCTAGCAATGTTTTCACATTTATGGCAAGTTTACGCATTGCCCAGGAGCCAATTAGGTTAATCCCTGATGTCATTACAGCATTCATTGAGGCCAAGGTTTCGTTAGATCGGATTGCAAAGTTTCTTGACGCACCAGAGCTGCAGAACAAACATGTAAGGAAGATGTGTGATGGAAAGGAGCTGGAGGAATCCATTTTTATCAAGAGCAACAGAATTTCATGGGAGGATAACTCTACAAGGGCTACACTAAGGAACATAAATTTGGTGGTTAAGCCTGGGGAAAGGGTAGCTATTTGTGGAGAGGTTGGCTCAGGTAAATCAACACTATTAGCTGCTATTCTTGGAGAAGTTCCACACATTAATGGCATAGTTCGAGTTTATGGAAAGATTGCTTACGTCTCTCAGACAGCTTGGATTCCAACAGGGACCATACAAGAAAATATTCTGTTTGGGTCAGCTATGGATCCTTACAGATACAGAGAGGCTATTGAGAAGTGTGCCCTAGTGAAGGACCTTGAGATGCTTCCATTTGGTGATCTCACTGAAATAGGAGAAAGAGGTGTTAATCTGAGTGGTGGACAAAAGCAACGGGTTCAACTCGCACGCGCATTATATCAGGATGCAGATGTATATCTCCTGGATGATCCATTTAGTGCGGTCGATGCACATACTGCAACCAGTCTATTTAATGAATATGTCATGGGAGCTCTATCAACGAAGACGGTCATACTTGTGACCCACCAGGTGGACTTCCTTCCTGCATTTGATTCGGTTCTGTTAATGTCCGAAGGGGAGATCCTGCAAGCTGCTACCTTTGAGCAACTGATGCACTCTAGTCAAGAGTTCCAGGACCTTGTCAATGCACACAATGCCACAGTTCGTTCTGAGAGGCAACCTGAGCATGATTCTACCCAGAAATCTAAAATTCAGAAGGGAGAGATACAGAAGATTTACACCGAAAAACAATTAAGAGAAACATCAGGAGAGCAATTAATTAAGAAAGAAGAAAGAGAAACAGGAGACACCGGTCTCAAGCCTTACCTACAATACTTGAAATACAGCAAGGGATTCTTGTACTTCTTTTTGGCAACTCTATCTCATATCACATTCATTGTTGAGCAGTTGGTGCAAAACTATTGGTTGGCTGCAAATATCCACAATTCTAGTGTTAGCCAATTGAAACTGATTACAGTATACACAGGGATCGGATTAAGCTTATCACTCTTTTTATTGCTCCGTTCTTTTTTTGTTGTTCTTTTAGGCCTTGGGGCATCACAATCTATATTTTCTACACTGCTGAGCTCTCTTTTTCGAGCACCAATGTCCTTTTATGACTCAACACCTCTGGGAAGGATACTCAGTCGGGTATCTTCTGATTTGAGTGTGGTTGACCTTGATGTGGCCTTCAAATTTACTGTTGCTGTCGGGACAACTATGAATGCTTATGCCAATTTTGGAGTATTGACTATTCTTGCCTGGGAACTTGTGTTTGTCATTTTACCAACAATTTATCTAAGTATACTCATCCAGAGGTACTACTTTGCTGCTGGAAAAGAGTTGATGCGAATCAATGGCACGACTAAGTCCTTTGTTGCAAGCCATCTTTCTGAGTCCATTGCTGGAGCTATGACAATTAGAGCTTTCGGGGAGGAAGATAGACACTTTTCAAAGAATTTGGGCTTCATTGACATGAATGCAAGTCCATTCTTCTATAGTTTCACAGCAAATGAGTGGTTGATCCTACGCCTTGAAATACTATCTGCAATCGTTCTCTCATCTTCAGGCCTTGCCCTAACTTTGCTTCATACGAGTACTTCTAAATCTGGATTTATTGGAATGGCATTGTCTTATGGTCTTTCAGCGAATGTATTCCTTGTGTTTTCTGTCCAAAACCAGTGCCATTTAGCAAATATGATTGTTTCTGTTGAAAGATTAGAACAGTACACGAATATTCCTAGCGAAGCCCCTGAAGTCATAGAGAGTAATCGACCACCAGTCAGTTGGCCTACTATTGGTGAAGTGGAAATTTATGATTTGAAGGTCAAGTATCGGCCCAATGCTCCTCTAGTTCTTCATGGAATTAGTTGCAAATTTGGAGGAGGACAGAAAATTGGGATCGTTGGCCGGACTGGTAGTGGAAAGACAACACTTATCAGCATTTTGTTTCGCTTGGTAGAGCCTACAGAGGGACAGATAATTATAGATGGCATAGATATTGCCACAATTGGGCTTCATGATCTCAGATCACGTCTTGGGATCATTCCGCAAGAACCAACTCTCTTTAGTGGGTCTGTAAGATACAATCTTGACCCCTTATCACTGCATACTGATGAGGAAATATGGGTGGTTCTGGAAAAATGTCAACTTCGAGGGGCTGTTCAAGAGAAAGAAGAGGGTCTGGACTCCTTGGTTGTACAAGACGGATCAAATTGGAGCATGGGCCAGCGACAATTATTCTGCTTGGGACGTGCTCTACTGAGGAGAAGTCGGATACTAGTGCTTGATGAAGCCACTGCATCCATAGACAATGCAACCGACTCCATTCTCCAGAAGACCATAAGAACAGAATTTGCAGACTGCACTGTAATTACAGTAGCCCACAGAATCCCAACCGTGATGGACTGCACAATGGTGCTTGCTATCAGTGATGGAAAATTGGTAGAGTACGATGAGCCGATGAAGCTGATAAAGGAGGAGGGATCACTGTTTGGGCAGCTTGTCAAGGAGTACTGGTCTCGCTCTTCAAATGGAAGTAATGCCTCAGGAGATTGGCTCTGA 4473 0.4254 MGESLWTVFCGSSWCWSKIGKICSSGFLAIVCPCSCLNHILVISVDIIVLLYLLFIFIYKASAMKILSPQQSRCFSTMLNSAAFLNGSLGLVYLGLGFWIVGEKLSEENTILPLHGWLVVLLQGFTWFFLGLAVRFKRHQLLHNAGLRLCSVLAFFIAGFPCVTSFWEAIVGDAVSVKVILDVISFPGAILLMFCTFTGPKYAGTDSGFDGAAFYRPLPGEGSSAGDKINTDASLPPFEKAGLISRMSFWWLNSLMKKGKQKTLEDKDIPQLRREDRAEMCYLMFMEQQNKQKQQSSDSPSILSTILLWQWKQILISGFFALMKVLTLSTGPLFLRAFILVAEGKEAFKYEGYALTGGLFLTKCLESLSERQWFFRTRLIGLQVRSFLSAAIYQKQLKLSNTAKGLYSPAQIVSFVIIDAYNIGEFPYWFHQIWSTSLQLCLALIIIYYSLGLATIAALFVVILTVVANSPMGRLQHKYQKMLMGTQDKRLKAFTEALTNMKSLKLYAWETHFKNVIERLRKEEFKWLVSVLSQKGYSLILFWSSPIVVSAITFTACYFIGTTLSASNVFTFMASLRIAQEPIRLIPDVITAFIEAKVSLDRIAKFLDAPELQNKHVRKMCDGKELEESIFIKSNRISWEDNSTRATLRNINLVVKPGERVAICGEVGSGKSTLLAAILGEVPHINGIVRVYGKIAYVSQTAWIPTGTIQENILFGSAMDPYRYREAIEKCALVKDLEMLPFGDLTEIGERGVNLSGGQKQRVQLARALYQDADVYLLDDPFSAVDAHTATSLFNEYVMGALSTKTVILVTHQVDFLPAFDSVLLMSEGEILQAATFEQLMHSSQEFQDLVNAHNATVRSERQPEHDSTQKSKIQKGEIQKIYTEKQLRETSGEQLIKKEERETGDTGLKPYLQYLKYSKGFLYFFLATLSHITFIVEQLVQNYWLAANIHNSSVSQLKLITVYTGIGLSLSLFLLLRSFFVVLLGLGASQSIFSTLLSSLFRAPMSFYDSTPLGRILSRVSSDLSVVDLDVAFKFTVAVGTTMNAYANFGVLTILAWELVFVILPTIYLSILIQRYYFAAGKELMRINGTTKSFVASHLSESIAGAMTIRAFGEEDRHFSKNLGFIDMNASPFFYSFTANEWLILRLEILSAIVLSSSGLALTLLHTSTSKSGFIGMALSYGLSANVFLVFSVQNQCHLANMIVSVERLEQYTNIPSEAPEVIESNRPPVSWPTIGEVEIYDLKVKYRPNAPLVLHGISCKFGGGQKIGIVGRTGSGKTTLISILFRLVEPTEGQIIIDGIDIATIGLHDLRSRLGIIPQEPTLFSGSVRYNLDPLSLHTDEEIWVVLEKCQLRGAVQEKEEGLDSLVVQDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDSILQKTIRTEFADCTVITVAHRIPTVMDCTMVLAISDGKLVEYDEPMKLIKEEGSLFGQLVKEYWSRSSNGSNASGDWL* 1491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0106 1490 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1229 1466 IPR027417 -
Vvi2g0106 1490 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 632 853 IPR003439 GO:0005524
Vvi2g0106 1490 Gene3D - 1223 1474 IPR027417 -
Vvi2g0106 1490 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 238 1476 - -
Vvi2g0106 1490 SMART AAA_5 1265 1457 IPR003593 GO:0016887
Vvi2g0106 1490 SMART AAA_5 657 830 IPR003593 GO:0016887
Vvi2g0106 1490 CDD ABC_6TM_ABCC_D1 316 603 IPR044746 GO:0140359
Vvi2g0106 1490 Gene3D ABC transporter type 1, transmembrane domain 886 1220 IPR036640 GO:0005524|GO:0016020
Vvi2g0106 1490 Gene3D ABC transporter type 1, transmembrane domain 285 612 IPR036640 GO:0005524|GO:0016020
Vvi2g0106 1490 CDD ABC_6TM_ABCC_D2 921 1214 IPR044726 GO:0140359
Vvi2g0106 1490 FunFam ABC transporter C family member 3 1222 1474 - -
Vvi2g0106 1490 FunFam ABC transporter C family member 10 298 611 - -
Vvi2g0106 1490 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 315 595 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vvi2g0106 1490 FunFam ABC transporter C family member 5 888 1220 - -
Vvi2g0106 1490 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 922 1202 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vvi2g0106 1490 SUPERFAMILY ABC transporter transmembrane region 913 1219 IPR036640 GO:0005524|GO:0016020
Vvi2g0106 1490 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 628 853 IPR027417 -
Vvi2g0106 1490 CDD ABCC_MRP_domain2 1237 1457 - -
Vvi2g0106 1490 FunFam ABC transporter C family member 10 612 866 - -
Vvi2g0106 1490 Gene3D - 636 884 IPR027417 -
Vvi2g0106 1490 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1239 1473 IPR003439 GO:0005524
Vvi2g0106 1490 SUPERFAMILY ABC transporter transmembrane region 306 611 IPR036640 GO:0005524|GO:0016020
Vvi2g0106 1490 CDD ABCC_MRP_domain1 637 830 - -
Vvi2g0106 1490 ProSitePatterns ABC transporters family signature. 755 769 IPR017871 GO:0005524|GO:0016887
Vvi2g0106 1490 Pfam ABC transporter transmembrane region 922 1158 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vvi2g0106 1490 Pfam ABC transporter transmembrane region 315 579 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vvi2g0106 1490 Pfam ABC transporter 1256 1404 IPR003439 GO:0005524
Vvi2g0106 1490 Pfam ABC transporter 648 782 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0106 Vvi-Chr2 916178 923605 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0106 572 843 Calmodulin-binding Proteins AT2G36910 28.374 2.26e-20 96.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0106 K05666 - vvi:100260321 2880.12