Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0100 ATGGGTGAGGATCTCTGGGATGTTTTCTGTGGAAATTCTGGGTGTTCGAGAAAAGTTGGAAAGATATGTACGACAAAGCTTTTACCCTCCCAAAAGTCTAGATGCTCTACCAAAATGCCAAATTCAGCAGCCATTTTTAACGGTGGTTTGGGTTTAGTTTATTTGGGTTTTGGTTTCTGGATGGTGGCAGAGAAGCCAAGTAATGAGGATATTGTTCTACCTCTGTATCGGTGTTTAATGGTGTTATCACAAGGCTTCACATGGTCTTTGCTGGGTGTAGCTGTGTGGTTTAAAAGGCATCAACTTGCAGAGATCACTTTGATGAGGCTTTGTTCAATATTTGCCTTCTTTTTTGCTGGCTTTCTTTGTCTTCAATCTTTGTGGGAGCCCATTGTGGAGAATGCAGAATTGGTTAAGATAGTTTTAGATATTTTATCTTTTCCTGGAGCAATTCTACTGCTGTTCTGCACTTTTTGGACACCAGAATATGCAGAAACTAAAGGAGATACCAATGGTGCTGCCTTCTATACACCTTTATCATGTGAAGAAGCCTGTGGTGGCAGTAAGATTAATTCAGAAGACAACTTAACTCCTTTTGCAAAAGCTGGATTTCTGAGTAGAATGTCATTTTGGTGGTTAAATTCATTGCTGAAGAAGGGTAAGAAGAAAACTCTTGAGGATAGAGACGTTCCACTGTTACGGAGGGAAGATCGAGCAGAAACGTGTTACTCCATGTTCTTGGAACAACAGAACAAACAGAAGCAAAAAGAATCATCTGATCCTCCTTCAATGTTGACAACGATCTTCTTTTGCTATTGGAAAGAGATTTTCATTACAGGCTTATTTGCATTGATCAAGGTGCTTGCACTGGCTACTGGGCCTTTGTTTGTTAGGGCCTTCATTATGGTTGCTGAAGGCAAAGAAGCTTTTAAGTATGAGGGCTATGCACTGACAGGAGGACTCTTCCTCACTAAATGCTTAGAATCGTTATTGGAGAGGCAATGGTTCTTTCGAACTAGACTAATCGGGCTCCAAGTGAGATCCTTGCTGTCTGCAGCCATTTATCAGAAGCAGCTTCGACTCTCAAACACTGCAAAGGCATCTCATTCCTCTGGTGAGATAATGAATTATGTTACTGTAGACACTTACAGAATAGGTGAATTCCCATACTGGCTTCACCAGGTATGGTCAACAAGCCTCCAGATGTGTCTTGCGATACTTATTGTTTACTATTCAGTGGGGCTGGCTACTGTTGTTCCTCTACTTGCAATATTATTGACCGTGCTCGTAAATTCTCCTTTGGGCAAATTGCAACTTAAGTATCAGATAAAGCTCATGGCAGCACAGGACAGGAAGCTGAAGGCTTTTACAGAATCACTTATAAACATGAAAATTCTGAAGCTGTATGCTTGGGAGACACACTTCAAGAATGTTATAGAAGGGTTAAGGAAAGAGGAATCTCAGTGGCTATCAGCAGTTCTAATGAAGAGAGCACAAAAATTGGTCCTGTTTTGGTCATGTCCTGTTCTTGGATCAGCTGCTACTTTCTGGGCATGTTACTTTCTAGGAATTCCTCTCACTGCAAGTAGTGCTTTTACATTTCTGGCAAGTTTACGCATTGTTCAGGAGCCAATTAGGTTAATCCCTGAAGTTGTTTCAGCATTCATTGAAGCAAAGGTTTCATTAACTCGGATTGTAAAGTTTCTTGAGGCACCTGAGGTGGATGGCAGACATGTCAAGAAGATGTTTGATGGTAAGGAACTAGAGGAATCCATTTTTATCAAGGCTGACAGAATTTCATGGGATAATAACTCTACAAGGGCCACATTAAGGAACATAAATTTAGTGGTTAAACATGGGGAAAAAGTAGCTATTTGTGGGGAGGTTGGCTCTGGTAAATCAACGCTTTTAGCTGTTATTCTTGGAGAAGTTCCACATGTCGATGGCAAAGTTCAAGCATATGGAAAGATGGCTTATGTCTCTCAGGCAGCATGGATCCAAACAGGGACTATACAAGAAAATATTCTGTTTGGGTCTGCCATGGACCCATACAGATACAGGGAGGTGATTGAAAAGTGTTCCCTAGTGAAGGACCTCGAGATGCTTCCATTCGGTGACCTCACTGAAATAGGAGAAAGAGGTGTTAATCTAAGTGGTGGACAGAAGCAGCGGGTTCAACTTGCACGTGCATTGTATCAGGATGCAGATGTATATCTCCTGGATGATCCATTCAGTGCTGTTGATGCTCATACTGCAGCTAGTCTGTTTAATGAATATGTAATGGGAGCTCTATCAAGCAAGACAGTCATACTTGTGACCCACCAAGTAGACTTCCTTCCTGCATTCGATTCTGTTTTGCTAATGTCTGAAGGGGAAATCCTGCAAGCTGCTACCTATGACCAGTTGATGCACTCTAGTCAAGAGTTTTGGGACCTTGTTGAAGCACACAAAGGAACTGCTGGCTCTGAGAGACAACAAGATCATGCTTCATCCCAAAAACCCAATACTTCCAAGCGAGAGATCCAGACAATTTACACCAAAGAAGAGTTTGGAGAAACTTCAGGGGATCAGTTAATTAAGAAAGAAGAAAGAGAGACGGGAGACACTGGCTTCAAACCTTATATACAGTACTTGAAACAGAGCAAGGGCTTCTTGTACTTCTCATTCAAACCGAAACTGCTTACTGTATATACAGTGATTGGATTTAGCATGATAATTTTTTTGTTCTTCAGGTCCATTTTTATAGTTGTTTTAGGCCTTAGAGCATCGGAATCTATTTTTTCTACACTGCTGAGCTCTCTTTTCCAAGCACCAATGTTCTTTTATGACTCTACACCTCTGGGAAGGATACTCAGTCGGGTATCTTCTGATTTGAGTGTGGTTGACCTTGATTTGGCCTTCAAATTAACTTTTGCTGTTGGGGCAGCTGTGACTACATACTCCAGTTTTGGAGTGGTAGCTATTTTTGCCTGGCAACTCTTGTTTGTCATTGTACCCACAATTTATCTAACGACACTTATTCAGAGCTACTACTTTGCTTCCGCAAAAGAGTTGATGCGAATCAGTGGCACAACTAAGTCTCTCGTTGCTAGCCATCTTGCTGAGTCTGTTGCTGGAGCTATGACAATCAGAGCTTTCAGGGAGGAAGATAGACTCTTTTCGAAGAATTTGGACCTCATTGACACAAATGCAAGTCCTCTCTTTCATAATTTTACTGCAAATGAATGGTATATCCAACGTCTTGAAATAATATCTGCAATTGCTCTCTCATCTGCTGCCCTTGCCCTGACTTTGCTTCCTGAAGGAGCTTCTAAATCAGGATTTGTTGGAATGGCATTGTCATACGGTCTTTCATTGAATGTATTCCTTGTATTTACTGTCCAAAACCAGTGCAGTCTAGCAAATATGATCATTTCTGTCGAAAGGCTAGAACAGTACATGCATATTCCTAGTGAAGCCCCTGAAGTAATAGAATATAATCGACCTCCACCCAACTGGCCTGCTATTGGTGAAGTGGAAATTTGTGATTTGAAGGTAAACGACATCAACAAGAATTTAAGTATCTGTGTCTATTCTACAATTTTGAAATGTATAGAGATTAATGTATCAATAAAATGA 3618 0.4099 MGEDLWDVFCGNSGCSRKVGKICTTKLLPSQKSRCSTKMPNSAAIFNGGLGLVYLGFGFWMVAEKPSNEDIVLPLYRCLMVLSQGFTWSLLGVAVWFKRHQLAEITLMRLCSIFAFFFAGFLCLQSLWEPIVENAELVKIVLDILSFPGAILLLFCTFWTPEYAETKGDTNGAAFYTPLSCEEACGGSKINSEDNLTPFAKAGFLSRMSFWWLNSLLKKGKKKTLEDRDVPLLRREDRAETCYSMFLEQQNKQKQKESSDPPSMLTTIFFCYWKEIFITGLFALIKVLALATGPLFVRAFIMVAEGKEAFKYEGYALTGGLFLTKCLESLLERQWFFRTRLIGLQVRSLLSAAIYQKQLRLSNTAKASHSSGEIMNYVTVDTYRIGEFPYWLHQVWSTSLQMCLAILIVYYSVGLATVVPLLAILLTVLVNSPLGKLQLKYQIKLMAAQDRKLKAFTESLINMKILKLYAWETHFKNVIEGLRKEESQWLSAVLMKRAQKLVLFWSCPVLGSAATFWACYFLGIPLTASSAFTFLASLRIVQEPIRLIPEVVSAFIEAKVSLTRIVKFLEAPEVDGRHVKKMFDGKELEESIFIKADRISWDNNSTRATLRNINLVVKHGEKVAICGEVGSGKSTLLAVILGEVPHVDGKVQAYGKMAYVSQAAWIQTGTIQENILFGSAMDPYRYREVIEKCSLVKDLEMLPFGDLTEIGERGVNLSGGQKQRVQLARALYQDADVYLLDDPFSAVDAHTAASLFNEYVMGALSSKTVILVTHQVDFLPAFDSVLLMSEGEILQAATYDQLMHSSQEFWDLVEAHKGTAGSERQQDHASSQKPNTSKREIQTIYTKEEFGETSGDQLIKKEERETGDTGFKPYIQYLKQSKGFLYFSFKPKLLTVYTVIGFSMIIFLFFRSIFIVVLGLRASESIFSTLLSSLFQAPMFFYDSTPLGRILSRVSSDLSVVDLDLAFKLTFAVGAAVTTYSSFGVVAIFAWQLLFVIVPTIYLTTLIQSYYFASAKELMRISGTTKSLVASHLAESVAGAMTIRAFREEDRLFSKNLDLIDTNASPLFHNFTANEWYIQRLEIISAIALSSAALALTLLPEGASKSGFVGMALSYGLSLNVFLVFTVQNQCSLANMIISVERLEQYMHIPSEAPEVIEYNRPPPNWPAIGEVEICDLKVNDINKNLSICVYSTILKCIEINVSIK* 1206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0100 1205 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 893 1135 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vvi2g0100 1205 FunFam ABC transporter C family member 10 574 828 - -
Vvi2g0100 1205 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 199 1179 - -
Vvi2g0100 1205 CDD ABCC_MRP_domain1 599 792 - -
Vvi2g0100 1205 ProSitePatterns ABC transporters family signature. 717 731 IPR017871 GO:0005524|GO:0016887
Vvi2g0100 1205 CDD ABC_6TM_ABCC_D2 894 1147 IPR044726 GO:0140359
Vvi2g0100 1205 Gene3D - 572 842 IPR027417 -
Vvi2g0100 1205 SUPERFAMILY ABC transporter transmembrane region 265 570 IPR036640 GO:0005524|GO:0016020
Vvi2g0100 1205 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 594 815 IPR003439 GO:0005524
Vvi2g0100 1205 SUPERFAMILY ABC transporter transmembrane region 889 1152 IPR036640 GO:0005524|GO:0016020
Vvi2g0100 1205 Pfam ABC transporter 610 744 IPR003439 GO:0005524
Vvi2g0100 1205 Gene3D ABC transporter type 1, transmembrane domain 246 571 IPR036640 GO:0005524|GO:0016020
Vvi2g0100 1205 Gene3D ABC transporter type 1, transmembrane domain 849 1153 IPR036640 GO:0005524|GO:0016020
Vvi2g0100 1205 SMART AAA_5 619 792 IPR003593 GO:0016887
Vvi2g0100 1205 CDD ABC_6TM_ABCC_D1 278 565 IPR044746 GO:0140359
Vvi2g0100 1205 FunFam ABC transporter C family member 5 889 1153 - -
Vvi2g0100 1205 FunFam ABC transporter C family member 10 260 573 - -
Vvi2g0100 1205 Pfam ABC transporter transmembrane region 277 544 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vvi2g0100 1205 Pfam ABC transporter transmembrane region 893 1098 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vvi2g0100 1205 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 277 557 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vvi2g0100 1205 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 591 815 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0100 Vvi-Chr2 875537 881632 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0100 610 843 Calmodulin-binding Proteins AT2G36910 27.273 1.28e-20 97.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0100 K05666 - vvi:100244944 2247.63