Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0088 ATGGGAATTTTGGTCCCCAAAGGTCCTTTCGCAAGTGCTCTTGTGGAAAAAGTGAGGACCTTCGGATTGAAGACTGATGTGGCCACAATTAGGGGGCTTCAATCGTGGGGTCTCCTTGTTTTGGTCATATTTACAGCCTGTTTGGGGAAGATTGCAGGAACCGTTGCTGTCTCCCTTAGTTGGAGAATGCCTGTTCGGGGGGAGGCTCTAGCTCTGGGGTTCCTAATGAACAGCAAGGGCTTGGTGGAGCTCATCGTCCTCAACATTGGTAAAGAGAGAAAGGTATTGAATGATCAAACATTTGCCATCATGGTTCTCATGGCTCTCTGCACAACCTTTATCACAACACCTCTAGTTATAGCAGTATACAAGCCGGCTAAAAGGACAAGTAAAGCCGATTACAATCACAGAACAATTGATAGAAGAACCCCTATGCTGAACTTCGAATCTTGGTTTGTTTCCAGAGTGCAAACAGCATTCCTACAATTATCAATCTCGTTGAGGCTTCACGTGGAACCGGGAAGAGGGAAGGACTTTGTGTCTATGCAATGCACCTCATGGAGCTGTCAGAGAGGTCATCTGCAATACTGA 591 0.4636 MGILVPKGPFASALVEKVRTFGLKTDVATIRGLQSWGLLVLVIFTACLGKIAGTVAVSLSWRMPVRGEALALGFLMNSKGLVELIVLNIGKERKVLNDQTFAIMVLMALCTTFITTPLVIAVYKPAKRTSKADYNHRTIDRRTPMLNFESWFVSRVQTAFLQLSISLRLHVEPGRGKDFVSMQCTSWSCQRGHLQY* 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0088 196 Pfam Sodium/hydrogen exchanger family 21 118 IPR006153 GO:0006812|GO:0015297|GO:0016020|GO:0055085|GO:1902600
Vvi2g0088 196 Gene3D - 1 133 IPR038770 -
Vvi2g0088 196 PANTHER CATION/H + ANTIPORTER 1 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0088 Vvi-Chr2 805560 806989 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0088 1 143 Antiporter Super Family AT5G41610 65.190 6.96e-59 195
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0088 - - vvi:100248364 243.432