Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0078 ATGGGTAACTGCAACGGACTGCCGTCCGGCGACACGCAGTTTCAGATAAACGCCGGTCGAGATGGTGGTGTACGCCCCTCATCTCATGCTCACTCTTCCAATGGCCTCAACGTGCGCCCTCCCTCCCCTTCCCCCCCTCCGCCGCCTAGGACGGCCGCCCCTGTCGTCCATCGCCCTCTTGCAGGCAACGGTCGAGTACTCGGCCGGCCGATGGAGGATGTTCGACAAACCTACATTTTTGGGCGCGAGCTGGGCCGGGGGCAGTTTGGTGTGACCTACCTGGTGACGCATAAGGAAACGAAGGAGCAATTCGCCTGCAAATCGATCGCGACGAGGAAGCTGGTGAACCGCGATGACATCGAGGATGTGCGGAGGGAGGTGCAGATCATGCACCACCTGACCGGGCACCGCAATATCGTGGAGCTCAAGGGCGCCTACGAGGATCGACACTCTGTGAATCTGGTGATGGAGCTCTGCGCCGGCGGCGAGCTATTTGATCGGATCATCGCTAAAGGTCATTACTCGGAGCGGGCCGCGGCGGCGTTGTGTCGGCAGATCGTGACGGTGGTTCACAACTGCCATACCATGGGAGTGATGCATAGGGATTTGAAGCCTGAAAACTTTTTGTTCCTGAGTACTGCGGAGGATTCGCCGTTGAAGGCCACGGATTTTGGACTTTCGGTCTTCTTTAAACCAGGAGATGTATTTAAAGACCTAGTTGGGAGTGCATATTACGTAGCTCCCGAAGTGTTGCGCCGAAGTTATGGAGCTGAGGCTGATATTTGGAGTGCAGGGGTGATACTGTTCATTCTACTTAGTGGGGTCCCACCATTCTGGGGAGAGAATGAGCAGAGTATCTTTGACACTATTCTACGAGGACATATTGATTTCTCGTCAGATCCTTGGCCTTCCATATCAAATAGTGCTAAAGATCTTGTGAAGAAGATGCTACGTGCTGATCCTAAAGAAAGACTTACTGCAATTGATGTCCTGAATCATCCATGGATGAAAGAAGATGGGGCATCTGATAAGCCCATTGATATTGCTGTCTTAACTAGAGTGAAGCAGTTCAGGGCCATGAACAAACTCAAGAAAGTGGCTCTAAAGGTAATTGCAGAAAATCTTTCTGAAGAAGAAATCATAGGCTTGAAGGAGATGTTCAAATCCATGGACACTGATAACAGTGGAACAATTACTTATGAGGAGTTGAAAAATGGTCTTCCAAAATTGGGTACCAAGCTTTCTGAATCTGAAGTGAGGCAGTTGATGGAAGCGGCTGATGTGGATGGAAATGGAACAATTGATTACATCGAGTTTATATCAGCCACAATGCATATGAATAGAATGGAAAGAGAGGACCACTTATATAGGGCTTTTGAATATTTTGACAAGGACAAAAGCGGGTATATTACAATGGAAGAATTGGAGCATGCCCTAAAGAGGTATAATATGGGTGATGAAAAAACAATAAAGGAGATCATTGCAGAAGTTGACACAGATCACGATGGAAGAATCAACTATGAAGAGTTTGCAGCTATGATGAGGAAAGGAAACCCGGATTTGATCACAAACAGACGTCGGAAATGA 1587 0.4852 MGNCNGLPSGDTQFQINAGRDGGVRPSSHAHSSNGLNVRPPSPSPPPPPRTAAPVVHRPLAGNGRVLGRPMEDVRQTYIFGRELGRGQFGVTYLVTHKETKEQFACKSIATRKLVNRDDIEDVRREVQIMHHLTGHRNIVELKGAYEDRHSVNLVMELCAGGELFDRIIAKGHYSERAAAALCRQIVTVVHNCHTMGVMHRDLKPENFLFLSTAEDSPLKATDFGLSVFFKPGDVFKDLVGSAYYVAPEVLRRSYGAEADIWSAGVILFILLSGVPPFWGENEQSIFDTILRGHIDFSSDPWPSISNSAKDLVKKMLRADPKERLTAIDVLNHPWMKEDGASDKPIDIAVLTRVKQFRAMNKLKKVALKVIAENLSEEEIIGLKEMFKSMDTDNSGTITYEELKNGLPKLGTKLSESEVRQLMEAADVDGNGTIDYIEFISATMHMNRMEREDHLYRAFEYFDKDKSGYITMEELEHALKRYNMGDEKTIKEIIAEVDTDHDGRINYEEFAAMMRKGNPDLITNRRRK* 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0078 528 ProSiteProfiles EF-hand calcium-binding domain profile. 378 413 IPR002048 GO:0005509
Vvi2g0078 528 Pfam EF-hand domain pair 383 443 IPR002048 GO:0005509
Vvi2g0078 528 Pfam EF-hand domain pair 453 515 IPR002048 GO:0005509
Vvi2g0078 528 SUPERFAMILY EF-hand 374 515 IPR011992 -
Vvi2g0078 528 ProSitePatterns EF-hand calcium-binding domain. 427 439 IPR018247 -
Vvi2g0078 528 MobiDBLite consensus disorder prediction 39 54 - -
Vvi2g0078 528 FunFam Calcium-dependent protein kinase 1 80 163 - -
Vvi2g0078 528 SMART serkin_6 78 336 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi2g0078 528 ProSitePatterns EF-hand calcium-binding domain. 391 403 IPR018247 -
Vvi2g0078 528 SMART efh_1 382 410 IPR002048 GO:0005509
Vvi2g0078 528 SMART efh_1 454 482 IPR002048 GO:0005509
Vvi2g0078 528 SMART efh_1 418 446 IPR002048 GO:0005509
Vvi2g0078 528 SMART efh_1 489 517 IPR002048 GO:0005509
Vvi2g0078 528 MobiDBLite consensus disorder prediction 1 56 - -
Vvi2g0078 528 SUPERFAMILY Protein kinase-like (PK-like) 75 346 IPR011009 -
Vvi2g0078 528 ProSitePatterns Protein kinases ATP-binding region signature. 84 107 IPR017441 GO:0005524
Vvi2g0078 528 Gene3D Transferase(Phosphotransferase) domain 1 164 343 - -
Vvi2g0078 528 MobiDBLite consensus disorder prediction 1 16 - -
Vvi2g0078 528 ProSitePatterns EF-hand calcium-binding domain. 498 510 IPR018247 -
Vvi2g0078 528 ProSitePatterns Serine/Threonine protein kinases active-site signature. 198 210 IPR008271 GO:0004672|GO:0006468
Vvi2g0078 528 FunFam calcium-dependent protein kinase 1 164 343 - -
Vvi2g0078 528 PANTHER SERINE/THREONINE-PROTEIN KINASE 75 510 - -
Vvi2g0078 528 ProSiteProfiles Protein kinase domain profile. 78 336 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi2g0078 528 Gene3D Phosphorylase Kinase; domain 1 80 163 - -
Vvi2g0078 528 ProSiteProfiles EF-hand calcium-binding domain profile. 485 520 IPR002048 GO:0005509
Vvi2g0078 528 ProSiteProfiles EF-hand calcium-binding domain profile. 450 484 IPR002048 GO:0005509
Vvi2g0078 528 CDD STKc_CAMK 78 335 - -
Vvi2g0078 528 FunFam Calcium-dependent protein kinase 1 343 518 - -
Vvi2g0078 528 Gene3D - 344 518 - -
Vvi2g0078 528 Pfam Protein kinase domain 80 336 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi2g0078 528 ProSiteProfiles EF-hand calcium-binding domain profile. 414 449 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0078 Vvi-Chr2 734853 743496 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0078 63 527 EF-hand Containing Proteins AT4G23650 81.330 0.0 813
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Vvi2g0078 Pkinase 1.2e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0078 K13412 - vvi:100265650 1041.18