Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0053 ATGATGAGCGAGTTTTTGGGCATGGGGGACTGGGATTTGCAGTCTGTGGTTAGGGGATGCGCCATTAATGAAGCTTCCTCGGCCGCTTTCATGGACACTTCGTTGCCTTGCTTCGGCCCCTTGGCGATTCAACAAGACGAACTTCTCTTCAGCTTCCCCGACTTCTTTGAAACTACCACTGTTTTGGACGAATTGGAGCAGTTGTACAAGCCTTTCTACCCTGTTCTGCAACCGCTTTCTCCCGTACGAACAGCTGCCGCGCCCTCCATTTCCATGGAAGACCCAAAGAAGATGAAAGGGCAGGACCATCTTCCTGGCACTGCTGACAATGGTGGCGGTGGCCCTGGTTCTCACGGGGCTAAACCCAAGAAAAGCAGGAAGAACCAGCAAAAACGAGTGGTGCAACATGTAACAGCCGAGGGTCTGTCTTCGGATGTGTGGGCTTGGCGTAAATATGGGCAGAAACCCATTAAGGGTTCGCCTTATCCAAGGAGTTATTACAGGTGCAGTAGTTTAAAGGGGTGTTTGGCGAGAAAACAAGTGGAGAGGAGCCGAACAGATCCGGAGATTTTCATTGTGACCTACACAGCTGAACACAGCCATTCTCATCCAACTCGCCGGAATTCCCTCGCCGGAATCACCAGAAACAAGTTCTCCACACCTAAAAAACCCAGCAAAGCCGAGCCGCCCAGCACACCAACAACAGTGGCCAATGATTCGTCCTCTTCTCCAATTTCAACCTCCGATTTCTCTGCAACAACCCCTTTAATGTCCGCCATGGAAGATGAGTTGCAGCCATATGTAAGCCAACAAGAGATCCGAGGAGAAGAAGATCAGAAGCTAAACGAGAGGAATAACACCAACGAGGTTCACATCTCTGATGAGATACTGAACAACGATTTCTTCCTGGGCCTGGAGGACATGGACTTTTCTGTACAGTTCCCGTCTTCTTTTCTTCAACCTTGGTTCGCCGCAACTGCCGCCGGCGGTTGCTGA 996 0.507 MMSEFLGMGDWDLQSVVRGCAINEASSAAFMDTSLPCFGPLAIQQDELLFSFPDFFETTTVLDELEQLYKPFYPVLQPLSPVRTAAAPSISMEDPKKMKGQDHLPGTADNGGGGPGSHGAKPKKSRKNQQKRVVQHVTAEGLSSDVWAWRKYGQKPIKGSPYPRSYYRCSSLKGCLARKQVERSRTDPEIFIVTYTAEHSHSHPTRRNSLAGITRNKFSTPKKPSKAEPPSTPTTVANDSSSSPISTSDFSATTPLMSAMEDELQPYVSQQEIRGEEDQKLNERNNTNEVHISDEILNNDFFLGLEDMDFSVQFPSSFLQPWFAATAAGGC* 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0053 331 ProSiteProfiles WRKY domain profile. 138 204 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi2g0053 331 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 61 313 IPR044810 GO:0003700
Vvi2g0053 331 MobiDBLite consensus disorder prediction 229 251 - -
Vvi2g0053 331 MobiDBLite consensus disorder prediction 198 251 - -
Vvi2g0053 331 MobiDBLite consensus disorder prediction 206 220 - -
Vvi2g0053 331 SUPERFAMILY WRKY DNA-binding domain 138 204 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi2g0053 331 SMART WRKY_cls 143 203 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi2g0053 331 Gene3D WRKY domain 126 197 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi2g0053 331 Pfam WRKY DNA -binding domain 145 201 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi2g0053 331 MobiDBLite consensus disorder prediction 86 137 - -
Vvi2g0053 331 FunFam WRKY transcription factor 22 126 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0053 Vvi-Chr2 512235 513432 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0053 10 330 WRKY Transcription Factor Family AT4G01250 39.879 1.97e-63 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vvi2g0053 WRKY 4.3e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0053 K13426 K13425 vvi:100251862 647.506