Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0044 ATGGGTCACCATTCTTGCTGCAATCAACAGAAGGTAAAGAGGGGGCTTTGGTCCCCTGAGGAAGACGAAAAGCTCATCAGATACATCACCACCTATGGCTATGGTTGTTGGAGTGAAGTCCCTGAGAAAGCTGGGCTACAAAGATGCGGCAAAAGCTGCCGCCTGAGGTGGATCAACTACTTGAGACCCGATATCAGAAGAGGGAGGTTCACCCCAGAGGAGGAGAAACTGATTATCAACCTTCATGGGGTTGTAGGCAATAGATGGGCTCATATTGCAAGTCACTTGCCTGGAAGAACAGACAATGAGATAAAGAATTACTGGAATTCGTGGATCAAAAAGAAGATAAGGAAGCCGTCGGCACCTCTAGCATCATCTATAACAAACACTGAGCATTCCCAATTGGGCTACGGTTCGAGCCAACTGGACATGGTGAATCAAGATTTGATGATGAAGCAGCCTGCTCAAGAAACCCTATTTTCTTCTCCTGCTCCTCTATTTATGTTCGACACTGGTTCACTAGACTTGATCGGGGATGGCAATGGACGAACGGAGCTTTTCCAGGAAGTGGCAGGCTTGAGTTCAGAAACATGGCAGCTGAACCAGCATCAAGTTGAAGCACTACCTCCTCCAGCATCTTATTCAGTTGGCATGGATACTAATTATTTGCCTCCATTGGTAGAGAACATAGAGAACATGGTGCCCATGCAGGTGCAATCTTGTAGCATCGACGAGGAGGGAGAGATAGCACTGGAGTGCTTACAGAGGCAGGAGTTGAATGACTGGGTTGAATCCCAACAGTGCCCAAGCTTTCTATTCTGGGATCAAGTTGAAGGACACCTTGGAGGAGAAGAGATTGCACCACCTTCATCCAACATGGGAGCTGTGTTATCGTCTTACTCGACATCTCTATAA 915 0.4721 MGHHSCCNQQKVKRGLWSPEEDEKLIRYITTYGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFTPEEEKLIINLHGVVGNRWAHIASHLPGRTDNEIKNYWNSWIKKKIRKPSAPLASSITNTEHSQLGYGSSQLDMVNQDLMMKQPAQETLFSSPAPLFMFDTGSLDLIGDGNGRTELFQEVAGLSSETWQLNQHQVEALPPPASYSVGMDTNYLPPLVENIENMVPMQVQSCSIDEEGEIALECLQRQELNDWVESQQCPSFLFWDQVEGHLGGEEIAPPSSNMGAVLSSYSTSL* 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0044 304 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Vvi2g0044 304 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vvi2g0044 304 CDD SANT 69 112 IPR001005 -
Vvi2g0044 304 SMART sant 66 114 IPR001005 -
Vvi2g0044 304 SMART sant 13 63 IPR001005 -
Vvi2g0044 304 Gene3D - 68 135 - -
Vvi2g0044 304 CDD SANT 17 61 IPR001005 -
Vvi2g0044 304 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Vvi2g0044 304 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vvi2g0044 304 FunFam MYB transcription factor 6 66 - -
Vvi2g0044 304 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vvi2g0044 304 PANTHER MYB DOMAIN PROTEIN 55 1 158 - -
Vvi2g0044 304 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Vvi2g0044 304 FunFam Transcription factor MYB26 68 137 - -
Vvi2g0044 304 Gene3D - 6 66 - -
Vvi2g0044 304 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0044 Vvi-Chr2 433948 435565 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0044 1 294 MYB Transcription Factor Family AT1G63910 50.552 1.13e-102 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vvi2g0044 Myb_DNA-binding 7.4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0044 K09422 K02947 vvi:100244939 637.491