Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0043 ATGCCCGGTTTGGTTACTGAGAAAACGAAGGAAAAGGGAAAGAAAGCTAATTGGATTTTTTTTTCTTTGTTTTTGTGGGCTTTGTTGATTAGAATTATTCCTGAGAAGAACCGCAGGGAGATCTCCAAGTATCTCTTTCAAGAGGGAGTTTGCTATGCGAAAAAGGACTACAATCTCGCGAAACATCCCGATATCGATGTCCCGAATCTGCAGGTTATCAAGTTGATGCAGAGCTTCAAGTCGAAGGAGTACGTAAGGGAGACCTTTGCATGGATGCATTACTACTGGTACCTCACCAATGACGGCATTGAATTTCTGAGAACTTACTTGAACCTTCCTTCCGAAATTGTCCCTGCAACTCTAAAGAAATCCGTTAAGCCCGCCGGTAGGCCAATGGGACCACCTGGTGACCGCCCACGTGGTCCACCTCGCTTTGAAGGAGATAGACCAAGGTTTGGTGACCGGGATGGGTACCGTGGAGGTCCACGAGGACCTCCAGGTGAGTTTGGTGACAAGGGTGGAGCTCCTGCTGATTATCAACCTTCTTTCAGGGTAATCAGAATCAATTTATGA 573 0.466 MPGLVTEKTKEKGKKANWIFFSLFLWALLIRIIPEKNRREISKYLFQEGVCYAKKDYNLAKHPDIDVPNLQVIKLMQSFKSKEYVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKSVKPAGRPMGPPGDRPRGPPRFEGDRPRFGDRDGYRGGPRGPPGEFGDKGGAPADYQPSFRVIRINL* 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0043 190 FunFam 40S ribosomal protein S10 31 134 - -
Vvi2g0043 190 Gene3D - 32 134 IPR036388 -
Vvi2g0043 190 MobiDBLite consensus disorder prediction 141 158 - -
Vvi2g0043 190 Pfam Plectin/S10 domain 33 124 IPR005326 -
Vvi2g0043 190 PANTHER 40S RIBOSOMAL PROTEIN S10 32 187 IPR037447 -
Vvi2g0043 190 MobiDBLite consensus disorder prediction 124 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0043 Vvi-Chr2 428171 429444 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0043 32 184 Cytoplasmic Ribosomal Protein Gene Family AT5G52650 77.922 3.49e-76 224
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0043 K02947 K09422 vvi:100243340 248.44