Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0039 ATGTCCATGGATGCGAGCTCTGGTTCTGGGGATGGTGGCAACATCAAAGGAGTGCCCACACATGGTGGCCGCTACGTACGCTACAATGTGTACGGAAACTTTTTCGAGGTCTCTGCAAAGTATGTTCCTCCGATTCGTCCGGTTGGTAGAGGTGCATATGGCATTGTCTGTGCTGCAGTAAATTCAGAAACACATGAGGAGGTTGCCATTAAGAAGATTGGTAATGCATTTGACAACAGAATAGATGCCAAAAGGACCTTAAGAGAAATTAAGCTCCTTCGTCACATGGATCATGAAAATGTTATTGCCATCAAGGACATTATACGACCACCAAAGAAGGAAACTTTCAATGATGTCTACATTGTTTATGAATTGATGGACACTGATCTTCATCAGATCATTTGTTCTAACCAATCCCTCACCGATGATCATTGTCAGTACTTTCTGTATCAGCTGTTGCGAGGATTAAAATATGTACACTCTGCAAATGTCTTGCACCGTGATCTAAAGCCCAGCAATTTGCTTCTGAATGCAAATTGCGATCTTAAGATTGGAGACTTTGGACTGGCAAGGACGACATCTGAAACGGATTTCATGACTGAGTATGTGGTCACTCGTTGGTATCGGGCACCAGAGTTGCTCCTTAATTGTTCAGAATATACTGCTGCGATTGATATATGGTCTGTTGGTTGCATACTAGGTGAAATCATGACCAGAGAACCATTATTCCCTGGCAAAGATTATGTTCATCAGCTGAGGCTTATCACAGAGCTTCTCGGTTCACCTGATGATGCAAGTCTTGGCTTTCTCCGAAGTAATAATGCCCGACGATATGTTAGGCAGCTTCCACAATATCCAAAGCAACAAATCTCTGCTAGATTCCCCAATATGTCACCTAGTGCTGTTGACTTGCTAGAGAAAATGCTTGTCTTTGATCCCACCAAGCGTATAACAGTCGACGAGGCACTATGTCACCCATATTTGTCATCTCTACATGATATCAATGATGAGCCTGTTTGTCCCAGTCCTTTTAGTTTTGATTTCGAGCAATCATCAATCACTGAAGAGAACATCAAGGAGCTCATCTGGAGGGAATCAGTGAAGTTTAATCCTGACCCAACTCACTAG 1128 0.4291 MSMDASSGSGDGGNIKGVPTHGGRYVRYNVYGNFFEVSAKYVPPIRPVGRGAYGIVCAAVNSETHEEVAIKKIGNAFDNRIDAKRTLREIKLLRHMDHENVIAIKDIIRPPKKETFNDVYIVYELMDTDLHQIICSNQSLTDDHCQYFLYQLLRGLKYVHSANVLHRDLKPSNLLLNANCDLKIGDFGLARTTSETDFMTEYVVTRWYRAPELLLNCSEYTAAIDIWSVGCILGEIMTREPLFPGKDYVHQLRLITELLGSPDDASLGFLRSNNARRYVRQLPQYPKQQISARFPNMSPSAVDLLEKMLVFDPTKRITVDEALCHPYLSSLHDINDEPVCPSPFSFDFEQSSITEENIKELIWRESVKFNPDPTH* 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0039 375 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 41 329 - -
Vvi2g0039 375 ProSitePatterns Serine/Threonine protein kinases active-site signature. 164 176 IPR008271 GO:0004672|GO:0006468
Vvi2g0039 375 ProSitePatterns Protein kinases ATP-binding region signature. 48 72 IPR017441 GO:0005524
Vvi2g0039 375 Pfam Protein kinase domain 46 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi2g0039 375 SMART serkin_6 42 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi2g0039 375 Gene3D Phosphorylase Kinase; domain 1 25 365 - -
Vvi2g0039 375 ProSitePatterns MAP kinase signature. 77 180 IPR003527 GO:0004707|GO:0005524|GO:0006468
Vvi2g0039 375 FunFam Mitogen-activated protein kinase 27 136 - -
Vvi2g0039 375 CDD STKc_TEY_MAPK 35 371 - -
Vvi2g0039 375 ProSiteProfiles Protein kinase domain profile. 42 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi2g0039 375 SUPERFAMILY Protein kinase-like (PK-like) 45 336 IPR011009 -
Vvi2g0039 375 FunFam Mitogen-activated protein kinase 126 355 - -
Vvi2g0039 375 Gene3D Transferase(Phosphotransferase) domain 1 126 355 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0039 Vvi-Chr2 380641 386715 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0039 1 371 MAP Kinase Gene Family AT4G01370 85.215 0.0 670
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Vvi2g0039 Pkinase 3.7e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0039 K20600 K04464 vvi:100260441 764.992