Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0032 ATGGCTGGGGAGAATCCGGCAGAGAAATCAAGGAACATGGTGTCATCTGCTGGCTTTGTTTACTCGGATGTTTCATCCACCAACCCAAGTATTCAGACCCAGACCCATCTGGTGAACCAGATCCAAAGCTTCGAGTCCAACCCAGAGATGTTCAACTTGACTACAGGCATGGAGATGATAGGGTTTCCTCCAAAAAATCTGCAGCAACCGAGTGATGCCAACTCGGTGATGTGGAAAGCGTTCTTTGGGAAACATGGAAATCACTCGGGACCCTCTTCTTCAAAGACAGTGAACGAGTCGACGAGCGATTATTATCAGCATGAGTTCAACAAGTCTGATTTCGCAACTGGGATTTCTCAGACAACAAGCGAGAATCTGATGGTTGCACCCGACTCAGCAGCATGGCAAGAGAACAGATTGATGGTTGATGATTCCTCTTTGAGGTGTGTGTTTCCTTGTGAAGGAAACGAGAGGCCCAGTCAAGGTCTCTCACTCTCTCTCAGTTCCAGCAATCCCTCTAGTATTGGGTTACAATCATTTGAACTCAGACACACTCATCATCAAGGTCAACAGGATGATCATATGAGGTTTCTCTCTTCAAATTCTAGAGATTGCTTCTTTGGAAAATCTGCGGCCATCCAAGAGCAACAAATGATGCAGGATGGGTTTCTGGGAAAAGCTGCAAATCTTAATCAAGGGAACTTCCAGCTGAGGAACTCAAAGTACTTGGGTCCTGCTCAGCAGCTTCTGAACGAGTGCTGTAACCTTGGAACAAAGCAGATTGATCCACCTAGGCAAAAGGCCCCCAAGACCAACCAGTGGGAGGATGAGAATGGAAGCAGTAGTAGCTGTTCAAGAAAGCCATCTCTCTACTCTCTGGAGCTCATGGAATTGCAGAAGAGAAAATCAAAGCTGCTTTCAATGCTTGAGGAGGTTGATAGAAGATACAAGCACTACTGCGATCAGATGAAGGCGGTGGTCTCATCCTTTGAAGCAGTGGCTGGAAACGGGGCTGCGAGAGTCTACTCGGCGTTGGCTTCAAAAGCCATGTCTAGGCATTTTAGATGTCTGAGAGACGGCATTGTGGGTCAGATTCAGGCCACTAAGAAGGCCATGGGAGAGAAAGACCCAGTTGCACCAGGCACAACCCGAGGGGAGACCCCCAGGCTAAGGGTTCTTGATCAAGCCCTGAGGCAACAGAGGGCATTTCAGCAGATGAGCATGATGGAGAGCCATCCATGGAGACCCCAACGAGGCTTACCCGAGAGATCAGTCTCTGTGCTTCGAGCTTGGTTGTTCGAGCACTTCCTCCACCCGTATCCCAGCGATGTAGATAAGCACATCTTAGCCCGCCAAACTGGTCTCTCAAGAAGCCAGGTATCCAATTGGTTCATCAATGCGAGGGTGAGGCTATGGAAACCCATGGTGGAAGAGATGTACTTAGAAGAAACAAAGGAGCAAGACAACCTGGGCTCCCCAGATGGGGCTACAGACCCCGACGACAATGGCCGGCCGAACCCTAATCCCCAGCCACGTATCGAAGATCAAAAGCCAACAGCCGAGCAACTTGTTCGAATAGACTCCGAGTGCCTCTCTTCCATCATCAACAACCCAGAGAAGAACGACTCTAAAAATGGCAAAAGCCTTCAAAACCCCCACCCCCACCACCTCCACCACCACCAGCCCAACTTCGGGCGAGTTGCCGAGGCCTTTGGAGCCGTGGAGTTGGACTTCTCCTCTTACAATCACCACACGGCCGGCGCTGTTTCTTTCACTAACGACAGTGCCCATCATAATTTCGGTGGCAGCGGCGTGTCCTTGACGCTGGGCTTACAACAGCATGGTGGAAGCGGGGTGAGCTTAGCATTCTCACCTGCATCACAGAGCTCTCTCTTCTACTCTAGAGACCCCATTGAAGATTGCCAACCAGTTCAGTACTCTCTTTTAGATGGAGAAGGACAGAACTTGCCTTACAGAAACTTGATGGGAGCGCAGTTGCTCCACGACTTGGCCGGATAA 2019 0.5002 MAGENPAEKSRNMVSSAGFVYSDVSSTNPSIQTQTHLVNQIQSFESNPEMFNLTTGMEMIGFPPKNLQQPSDANSVMWKAFFGKHGNHSGPSSSKTVNESTSDYYQHEFNKSDFATGISQTTSENLMVAPDSAAWQENRLMVDDSSLRCVFPCEGNERPSQGLSLSLSSSNPSSIGLQSFELRHTHHQGQQDDHMRFLSSNSRDCFFGKSAAIQEQQMMQDGFLGKAANLNQGNFQLRNSKYLGPAQQLLNECCNLGTKQIDPPRQKAPKTNQWEDENGSSSSCSRKPSLYSLELMELQKRKSKLLSMLEEVDRRYKHYCDQMKAVVSSFEAVAGNGAARVYSALASKAMSRHFRCLRDGIVGQIQATKKAMGEKDPVAPGTTRGETPRLRVLDQALRQQRAFQQMSMMESHPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPMVEEMYLEETKEQDNLGSPDGATDPDDNGRPNPNPQPRIEDQKPTAEQLVRIDSECLSSIINNPEKNDSKNGKSLQNPHPHHLHHHQPNFGRVAEAFGAVELDFSSYNHHTAGAVSFTNDSAHHNFGGSGVSLTLGLQQHGGSGVSLAFSPASQSSLFYSRDPIEDCQPVQYSLLDGEGQNLPYRNLMGAQLLHDLAG* 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0032 672 MobiDBLite consensus disorder prediction 484 520 - -
Vvi2g0032 672 MobiDBLite consensus disorder prediction 260 285 - -
Vvi2g0032 672 Pfam Associated with HOX 237 361 IPR006563 -
Vvi2g0032 672 SMART prehox3 231 363 IPR006563 -
Vvi2g0032 672 Coils Coil 295 315 - -
Vvi2g0032 672 Pfam Homeobox KN domain 431 470 IPR008422 GO:0003677|GO:0006355
Vvi2g0032 672 FunFam BEL1-like homeodomain protein 4 417 479 - -
Vvi2g0032 672 SMART HOX_1 414 478 IPR001356 GO:0003677
Vvi2g0032 672 CDD homeodomain 414 475 IPR001356 GO:0003677
Vvi2g0032 672 ProSiteProfiles 'Homeobox' domain profile. 411 474 IPR001356 GO:0003677
Vvi2g0032 672 MobiDBLite consensus disorder prediction 535 561 - -
Vvi2g0032 672 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 148 500 - -
Vvi2g0032 672 SUPERFAMILY Homeodomain-like 415 480 IPR009057 -
Vvi2g0032 672 Gene3D - 417 479 - -
Vvi2g0032 672 MobiDBLite consensus disorder prediction 535 550 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0032 Vvi-Chr2 331139 334256 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0032 132 671 Homeobox Transcription Factor Family AT5G41410 48.316 8.16e-147 438
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Vvi2g0032 POX 8.5e-48 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0032 - - vvi:100262204 1340.87