Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0026 ATGGGTTTTCCAGTGGGTTACACGGAGCTTCTCCTCCCGAAACTTCTTCTGCACACGCTTTCTCTTCTGGGTTTCATCAGAAAACTCATCTCCTACTTCTTCCGCTTCCTGGGTCTCACCGATTTTCTGGAACCGGACATTGTGTGGACGGAGGGGTCGACCCAGGTGCCGGAATTTCAGTCGGTGTCGGCGGTTCTGATCCGGGAGATCCTCCCGGTGATGAAGTTCGAGGAGCTGGTGGGGGCCGGCGCTGGAGACCCGCCGGACCAGTGTGCGGTCTGTCTGTATGAGTTTGAAGGACAGGAGGAGATCCGACGGCTGACGAACTGCCGGCACATATTTCACCGGAGCTGCCTGGACCGTTGGATGGACTGTGATCAGAAGACGTGTCCGCTTTGTAGAACTCCCTTCATCCCTGATGATATGCAAGAAGCCTTCAATGAGAGGCTTTGGGCTGCCTCTGCTCTTCCTGATTTCTATGGAGACTACTCTCCTCTTGGTTTATAG 507 0.5464 MGFPVGYTELLLPKLLLHTLSLLGFIRKLISYFFRFLGLTDFLEPDIVWTEGSTQVPEFQSVSAVLIREILPVMKFEELVGAGAGDPPDQCAVCLYEFEGQEEIRRLTNCRHIFHRSCLDRWMDCDQKTCPLCRTPFIPDDMQEAFNERLWAASALPDFYGDYSPLGL* 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0026 168 ProSiteProfiles Zinc finger RING-type profile. 91 134 IPR001841 -
Vvi2g0026 168 SUPERFAMILY RING/U-box 90 141 - -
Vvi2g0026 168 CDD RING-H2_RHA1-like 89 137 - -
Vvi2g0026 168 PANTHER RING ZINC FINGER PROTEIN-RELATED 22 154 - -
Vvi2g0026 168 SMART ring_2 91 133 IPR001841 -
Vvi2g0026 168 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 68 141 IPR013083 -
Vvi2g0026 168 FunFam RING-H2 finger protein ATL73 67 141 - -
Vvi2g0026 168 Pfam Ring finger domain 89 134 IPR001841 -
Vvi2g0026 168 SMART ringv_2 90 134 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0026 Vvi-Chr2 291153 291659 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0026 1 155 C3H Transcription Factor Family AT1G63840 55.696 1.02e-55 171
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0026 K16281 - vvi:100251967 341.658