Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0024 ATGGCTTCTGATCTCTTCCTAATCGACGATGTCGTTTCATCTGATATCGACGTCGACCTCCAGTTCCTGTCCGACGCCTTCTCTCCCTTCTCCGACTCGCCTCTCGACTTCCTCCAAGCAATTCAGGATGACCCAGTGAAGGAGAAGCCAGAGGATGAGGTTGAGGTTGAGGCTGAGGCCCAGGTGGTGGAGCAGGCTGTTCCGTCTGTTCCGATGCTGCATTCGTCGCCGCCTAGTCGGGAAATGGAGAGCCTCTCGCTTCGCCGGAGCACCCATTTGGCGGTGGTGGAGAATGGGACGGGTTTGGCGAGCGGGTTTGTGGGGCTTTCTGGTTTGGATGCTGTGAAACCAGAGCAACGTGGGGTGAGTTTGGAGGAGTGTTTTTACAATCCTGTTTTCGGCGCTCACAGCTATGGCGGTGATGAGAGTGCAGCGAGGATGATGCAGAGGAGCTTTAGCAGCCACTCGTTCGACGGGAGACGTGGGTTTTTGTTTCAGCCTGGCTTCAATGCTCCGCCGGGGTCTCCCAATTTCCAGAATCCAATCATCCGCTCGCCGGAAAACCTCTTTTTCAACGGCCACATGAGACGGGTTTGTAGCGCTGGAGACTTACAAGTTCGTTTCTTATCTACCAACCACAGGCAATTCTCACCGGATGCGGCCAGCTTCAGGGTGGGGCGTTACAGTGCTGAAGAGAGGAAGGAGAGGATTGACAAGTACAGAGCCAAGCGCACACAGAGGAATTTCAACAAGACAATCAAGTATGCATGTCGAAAAACACTAGCAGACAGTCGCCCTCGAGTACGTGGCAGGTTTGCACGCAATGATGAAATTGAAGAAACTCCCAAGGCTGAATGTTTCAATGCCTACGAATACGAGCAACAGCCATGGGTAATTCTCAATTTTACTCTCGAAATTGAAAGCACTTTTGTTACCTTGAAAAGCATCAACATTGACTTTCTCGCTCAATATATGAATAAAAGTTGGTGCTTATACAAGTGA 1002 0.51 MASDLFLIDDVVSSDIDVDLQFLSDAFSPFSDSPLDFLQAIQDDPVKEKPEDEVEVEAEAQVVEQAVPSVPMLHSSPPSREMESLSLRRSTHLAVVENGTGLASGFVGLSGLDAVKPEQRGVSLEECFYNPVFGAHSYGGDESAARMMQRSFSSHSFDGRRGFLFQPGFNAPPGSPNFQNPIIRSPENLFFNGHMRRVCSAGDLQVRFLSTNHRQFSPDAASFRVGRYSAEERKERIDKYRAKRTQRNFNKTIKYACRKTLADSRPRVRGRFARNDEIEETPKAECFNAYEYEQQPWVILNFTLEIESTFVTLKSINIDFLAQYMNKSWCLYK* 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0024 333 ProSiteProfiles CCT domain profile. 233 275 IPR010402 GO:0005515
Vvi2g0024 333 Pfam CCT motif 233 275 IPR010402 GO:0005515
Vvi2g0024 333 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 45 279 IPR045281 GO:0009909
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0024 Vvi-Chr2 279462 280724 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0024 229 279 C2C2-CO-like Transcription Factor Family AT5G57660 52.941 8.16e-11 60.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vvi2g0024 CCT 2e-18 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0024 - - vvi:104881088 531.176