Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0021 ATGCCTTATTCAAGGGAAGGAAGATCTGTTTCACCTGCCAACTCGGGTTCACCCATTCGGGGGCGACGATCAAGGTCAAGGTCGAGGTCAAGGTCATTGTCGAGGTCTAGGAGGAGTCGCTCGAGGAGCCGCGATTCGGTAGATGCTGTTAACCCGGGAAATAACTTGTATGTGACGGGTTTGTCAACAAGAGTTAATGCCAGTGATCTTGAGAAGTATTTTAACAGTGAAGGGAAGGTTGTTGAGTGCCATCTGGTAACAGATCCTCGCACCAGAGAATCCCGTGGATTTGGTTTTGTCACTATGGAGACTGTTGAGGATGCAGACCGCTGTATTAAATATCTTAATCGTTCTGTGCTTGAAGGTCGCCTCATCACCGTGGAAAAGGTCTGGTCTGTGTAG 402 0.4851 MPYSREGRSVSPANSGSPIRGRRSRSRSRSRSLSRSRRSRSRSRDSVDAVNPGNNLYVTGLSTRVNASDLEKYFNSEGKVVECHLVTDPRTRESRGFGFVTMETVEDADRCIKYLNRSVLEGRLITVEKVWSV* 134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0021 133 SUPERFAMILY RNA-binding domain, RBD 8 129 IPR035979 GO:0003676
Vvi2g0021 133 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 54 132 IPR000504 GO:0003723
Vvi2g0021 133 CDD RRM_SAFB_like 55 128 - -
Vvi2g0021 133 SMART rrm1_1 55 128 IPR000504 GO:0003723
Vvi2g0021 133 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 41 129 - -
Vvi2g0021 133 MobiDBLite consensus disorder prediction 1 55 - -
Vvi2g0021 133 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 56 125 IPR000504 GO:0003723
Vvi2g0021 133 MobiDBLite consensus disorder prediction 22 38 - -
Vvi2g0021 133 Gene3D - 4 131 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0021 Vvi-Chr2 251462 252804 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0021 54 132 Eukaryotic Initiation Factors Gene Family AT5G06000 40.506 1.15e-10 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0021 K12897 - vvi:100263989 213.001