Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0017 ATGCCCATGGATGGATGGTCGGTTCCGAGAAATGGGTCTGTCTTGGATTGTGGTGAAACGGGTGGGAGTTGTGAGACTGATGGGATTTGTGTTGACATTGGTAATAATAATTCTCTGAATGGCACTGATAAACTTCAGGTTTTATTCGATCAAGTTTTGTTGATTTTCATGAAGGAGGTTCTTGGGAATGAGTGTGTTAGGCCTATTCCGGCAATGCTTGGCGATGGGCGGTCTGTGGACTTGTTCAAACTTTTCTGGGTTGTGAGGGGGAAGGGGGGTTATGAGTGGGTTTCTGATAAAGGGTTGTGGGGTTTGGTGGCAGAGGAATGTGGGTTGGATGTTGGTGTTAAGACATGCCTAAAATTGATTTACTTCAAGTATTTGGATCAGTTGGATCAGTGGTTACTTGGGATTTTACGGGATGGGAGTTTGGATAAGGGGGAGGGTGAATGTGGTGGGAAGTTGGATTCGGTGTTGGAGGAGTTGGGGACAGAATTTAGAGGATTGATATTGGGTGGGACGGGCCCAAAAGAGAAAGATGATGGAGTTTTCGAATTAGAATCTGAGAGAACTGACAACTGCGTTGATTTGGACAAGGAGAAAAGTATTTTGAATCTGTCAATAGTGCTTCGCAGGGCAGAAAAAAGTCCTAATGATGATGATGAGAAAAATTGTGTTGATGGTGGTGATGATGTTGCGATCCAGGATCCCATTATTGCCAAGAAAAGTTCTTTTTCTCGTAAGAGAAAAAGAGAATCTTTTTCAGGAATGCTGAATTGGGTGAGAGAAATTGCAAAACATCCTGAAGAGCCTTATAAGGGGAATAAGAATGGAAATGAGGTTTTCTCAACCCAGATTTTAAGGGTACGGGAGTCGCTTTTGATAAGGAGGAAGGTCCACACAAAAGAAGAACAATCTCTCCTGCAGAAGCAGAAGATGCACCCCTCCATGTATGAGGATAATATTGTTGTCAATCACCAGTCTACAGAGAAGTCAAGGTGCAGTAGAAGGCTTTTTTCAGTGAAATCTCACTTATGTTCATGTTCAGCTGCTCAAAGTAAATTGCCAGGTCCTCACAGGACAAAGTCAGAGAGTTGCCCCAAAGAGCAAGCATTGACCCCTAATGAGCAAGAGCCTGAGAACACAAATACTTTAGATGACCTGTTTCCAGATGATCTCTTCCTAAAGCCCATTCCTGTGGGCCCCAACTTTCAAGCTGAAGTACCTGAATGGACTGGTGAGGTTACTGAGAGTGACTCCAAATGGCTGGGCACACAGGTATGGCCTTTGGAAAATGGGGAATGCAGTTTCCGTATTGAAAAGGACTGTGTTGGGAGAGGAAAACCAGATTCTTGTGACTGTCGGTTTTCAGGTTCTGTTGAATGTGTCAGATTTCATATTGCTGAGAAGAGGATGAAATTGAAGCTTGACCTGGGCTCATTGTTCTATCATTGGAGATTTGATCGTATGGGTGAAGAAATTTCACTGGCATGGACAACTGAAGAAGAAAAGAGGTTCAAGCATATGATAAGGTTGAATTCCTCATTGCAGAGTCCATCCTTTTGGGATAATGCATTGAGAATCTTTCCTACCAAGACAAGGGAGGCCTTGGTAAGCTATTACTTCAACGTGTTCCTTATCAGGCGCAGAATTTATCAGAACCGAGTGACTCCAAGAAAGATTGACAGTGATGATGATGAATTAGAGTTTGGATCTTTGGGTGGCAGTTTCGGGCATGAAGTGATTAAGGTTCCATGGTCTGAATTCCTGACATGCACCCAGAATGAGCAGTCTACTGAGTTGGATTAA 1809 0.4334 MPMDGWSVPRNGSVLDCGETGGSCETDGICVDIGNNNSLNGTDKLQVLFDQVLLIFMKEVLGNECVRPIPAMLGDGRSVDLFKLFWVVRGKGGYEWVSDKGLWGLVAEECGLDVGVKTCLKLIYFKYLDQLDQWLLGILRDGSLDKGEGECGGKLDSVLEELGTEFRGLILGGTGPKEKDDGVFELESERTDNCVDLDKEKSILNLSIVLRRAEKSPNDDDEKNCVDGGDDVAIQDPIIAKKSSFSRKRKRESFSGMLNWVREIAKHPEEPYKGNKNGNEVFSTQILRVRESLLIRRKVHTKEEQSLLQKQKMHPSMYEDNIVVNHQSTEKSRCSRRLFSVKSHLCSCSAAQSKLPGPHRTKSESCPKEQALTPNEQEPENTNTLDDLFPDDLFLKPIPVGPNFQAEVPEWTGEVTESDSKWLGTQVWPLENGECSFRIEKDCVGRGKPDSCDCRFSGSVECVRFHIAEKRMKLKLDLGSLFYHWRFDRMGEEISLAWTTEEEKRFKHMIRLNSSLQSPSFWDNALRIFPTKTREALVSYYFNVFLIRRRIYQNRVTPRKIDSDDDELEFGSLGGSFGHEVIKVPWSEFLTCTQNEQSTELD* 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0017 602 Gene3D - 34 141 IPR036431 GO:0003677
Vvi2g0017 602 SMART ELM2_2 398 449 IPR000949 -
Vvi2g0017 602 ProSiteProfiles ELM2 domain profile. 396 544 IPR000949 -
Vvi2g0017 602 SMART bright_3 44 137 IPR001606 GO:0003677
Vvi2g0017 602 MobiDBLite consensus disorder prediction 351 382 - -
Vvi2g0017 602 Pfam ARID/BRIGHT DNA binding domain 65 130 IPR001606 GO:0003677
Vvi2g0017 602 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 25 582 - -
Vvi2g0017 602 SUPERFAMILY ARID-like 38 136 IPR036431 GO:0003677
Vvi2g0017 602 CDD SANT 497 545 IPR001005 -
Vvi2g0017 602 CDD ARID 49 128 - -
Vvi2g0017 602 MobiDBLite consensus disorder prediction 367 382 - -
Vvi2g0017 602 ProSiteProfiles ARID domain profile. 43 136 IPR001606 GO:0003677
Vvi2g0017 602 SMART ARID_2 40 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0017 Vvi-Chr2 213709 224334 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Vvi2g0017 ARID 1.1e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0017 - - vvi:100245040 1219.14