Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0016 ATGGATGTGAGGGAGTTCCCGATTCAAAGTATTTTGTTCAATAAAGCTCTTCTGTTGTTATGTTCAATTTGGAATGAATTCATATGTATGGCAATCAACTTAATGATGTGCCCAAGAGCATCAGAAGAACATGAACCCTTATCATCTCATCATGGAGCGGCCTCTACGCTCTCTACAGGGCTCTTAGTTGATACAAATCTGGGAACATCACCTCCTGACACTTATAGACCACCCCCTGCACCAATTCCATACGATGTGGATTTAGGACATCCTCAAACTCCACCAGTTGCTGAAGAAAGCTGTGTTAACAAGAATGACACTGTAGTGCAAACAACAAATTCTGGATCTCTTGGAGAAGCAGTTGAGGGTAATATGTTAGAAACTTTAGCTAAATGTGAAGACTTAAAGCAGTCAGACTGCAAGATGCTAGCCCAATCTGAACTTACTTCATCAAAAGAAACAGAAGTTGAACTTTCAAAGTCAGGTGATCCAATTGTTTCCTCAACAGACGAGGAGGATGTTTGCCCCACCTGTCTTGAAGAGTATGATGCGGAGAATCCAAAAATTGTCACTAAATGTGAGCATCATTTTCACCTTGCATGCATTCTTGAGTGGATGGAAAGAAGTGACACCTGCCCTGTGTGTGATAAGGAAATGATATTCAACACTGCCACCAATGCGTAG 684 0.4152 MDVREFPIQSILFNKALLLLCSIWNEFICMAINLMMCPRASEEHEPLSSHHGAASTLSTGLLVDTNLGTSPPDTYRPPPAPIPYDVDLGHPQTPPVAEESCVNKNDTVVQTTNSGSLGEAVEGNMLETLAKCEDLKQSDCKMLAQSELTSSKETEVELSKSGDPIVSSTDEEDVCPTCLEEYDAENPKIVTKCEHHFHLACILEWMERSDTCPVCDKEMIFNTATNA* 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0016 227 CDD RING-H2_AIRP1-like 171 219 - -
Vvi2g0016 227 ProSiteProfiles Zinc finger RING-type profile. 175 216 IPR001841 -
Vvi2g0016 227 SUPERFAMILY RING/U-box 170 222 - -
Vvi2g0016 227 MobiDBLite consensus disorder prediction 62 84 - -
Vvi2g0016 227 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 36 222 - -
Vvi2g0016 227 Pfam RING-H2 zinc finger domain 168 215 IPR024766 GO:0008270
Vvi2g0016 227 FunFam Putative E3 ubiquitin-protein ligase RHB1A 151 220 - -
Vvi2g0016 227 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 150 222 IPR013083 -
Vvi2g0016 227 SMART ring_2 175 215 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0016 Vvi-Chr2 209926 211049 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0016 38 223 C3H Transcription Factor Family AT5G41350 51.852 3.28e-58 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0016 - - vvi:100248355 400.593