Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0013 ATGTGTGATTACAGTAGTAATCCCTCTTCTGACTTCGCTCTCCTGGAGTCTGTTCGCCGCCACTTGTTCGACGACTCCGACTCTCGTCGCTTCGACGCTCCCCTGTATTGCCGTAGCAATAGTTTTAGTAGCTTGTTTGAAACTGGGGGTGAATTGCCTTTGAAGGAGGATGATTCCGACGACATGGTGATCTATGGCTTTCTCCGCGACGCTGCCATCGGAGGCTGGACACCCACGCTCGCTCCACTCTTTTCAGAGACTGCCTCCTACGGTTTCTCTGCCGCCCCCGCGGTGGCCGTGAAATCGGAGCCGGAAGTTTTTCCGGCGGAGGTTATTGGAGTGCCCGAGAAGACGGTGGACCCACCGGCGAAATTACCTGCTCCGGCGGTGGTGCCGGCGAAGGGGAAGCATTACAGGGGCGTGCGGCAGAGGCCGTGGGGGAAGTTCGCTGCGGAGATTAGGGATCCGGCGAAGAACGGGGCTAGGGTTTGGCTGGGGACGTTCGAGACGGCAGAGGACGCCGCACTGGCTTATGACAGAGCCGCTTATCGGATGCGCGGCTCTCGCGCACTGCTCAATTTCCCACTCCGAGTTAACTCGGGGGAGCCCGATCCAGTCCGAGTGACCTCAAAACGATCCTCACCTGAGCCTTCCTCATCATCAACATCGTCATCATCATCAGATAATAGCTCACCCAAGCGTAGAAAGAAAGTGAGTAGCTTGGCTGCTCCCGCTGTGGCGCCGGCAACGGCTCAAACTGGAATCGAAATAGGGAAGTCAATGGAGGGATCCCAGGCGGGATATGAGGTGGCACAGCTTACACATGGCCCACAGCTATTGGTTCGCTAA 849 0.5724 MCDYSSNPSSDFALLESVRRHLFDDSDSRRFDAPLYCRSNSFSSLFETGGELPLKEDDSDDMVIYGFLRDAAIGGWTPTLAPLFSETASYGFSAAPAVAVKSEPEVFPAEVIGVPEKTVDPPAKLPAPAVVPAKGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAYRMRGSRALLNFPLRVNSGEPDPVRVTSKRSSPEPSSSSTSSSSSDNSSPKRRKKVSSLAAPAVAPATAQTGIEIGKSMEGSQAGYEVAQLTHGPQLLVR* 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0013 282 SUPERFAMILY DNA-binding domain 137 197 IPR016177 GO:0003677
Vvi2g0013 282 MobiDBLite consensus disorder prediction 211 229 - -
Vvi2g0013 282 CDD AP2 136 195 IPR001471 GO:0003700|GO:0006355
Vvi2g0013 282 SMART rav1_2 137 201 IPR001471 GO:0003700|GO:0006355
Vvi2g0013 282 PRINTS Ethylene responsive element binding protein signature 138 149 IPR001471 GO:0003700|GO:0006355
Vvi2g0013 282 PRINTS Ethylene responsive element binding protein signature 161 177 IPR001471 GO:0003700|GO:0006355
Vvi2g0013 282 MobiDBLite consensus disorder prediction 197 258 - -
Vvi2g0013 282 FunFam Ethylene-responsive transcription factor 2 136 196 - -
Vvi2g0013 282 ProSiteProfiles AP2/ERF domain profile. 137 195 IPR001471 GO:0003700|GO:0006355
Vvi2g0013 282 PANTHER DNA-BINDING DOMAIN 121 233 IPR044808 GO:0003700|GO:0009873
Vvi2g0013 282 Pfam AP2 domain 137 187 IPR001471 GO:0003700|GO:0006355
Vvi2g0013 282 Gene3D AP2/ERF domain 136 198 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0013 Vvi-Chr2 178039 178887 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0013 5 281 AP2-EREBP Transcription Factor Family AT4G17500 49.000 1.09e-75 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vvi2g0013 AP2 1.2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0013 K09286 - vvi:100254640 488.034