Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0008 ATGGAGCTGGAGATGGATAGTACTATTTCTTACTCAAGAGCTGGCATGGTGGCAGAAAGATCATTCTCGAGCAACAGCTTCAGCCTCAGTCAACCAAATGATCATCGCTCCTCAAGGTTCAGAGGGGTAGTTTTGCTACACAGTGGCAACTGGGGTGCGCGGATCTCCATCCAATACCAGCTTGTCTGGCTTGGGACATTCCCGACTGCAGAGGAGGCAGCTAGAGCTTATGATACAGCAGCCCTCAAGCTCCATAAAGGAGATTCATTCCTCAACTTCCCTTGGTCTGATCACAGCCCCCAAGAGATCATGTTCCAGAGCTATTACTCCATCGGTGAGATTTTCAAAATGATTAAAGATAAGTCTTACTCATCCAACCTTGCAACTTTCATTGCAGATCAATCATTGATAATGAACTATGCGAGTGACCAGATGTATGAACAAGGGATCTCTTATCAACTACTTTTTAAGAAGGCGCTAACTCCAAGAGATGTTGCCAAGCACCCTAGGCTACTCATCCCTAAGGAATATGCACTGATGTACTTTCCGCCAATCACAGGTGATGTGGAATCTGTCCAGTTAATGTTCTATGATAAGGATGGCATTCCTTGGACTTTCCGATATTCTTGTTGGGAGAGCAATCAGAGCTTTGTGTTTACAACTGGCTGGAAACAGTTTGTCAATGCAAAAAGACTGAAAAGAGGAGAGACTATCTCTTTTTATAGATGTGGAATTGAAGAGGAGTTTGAAGACAGTGCATTTTTCATGATAGATGTAGACCGTGGCGATTGGGAAAGTGATGCCATTGGTGAGCATATGGGAGAGGAAATCAGTGTGGGAGGAAACAGTAACAATGGAATGGATGCTGATGACAAGGAAAAAGAGGCAGCAGACAAAGGGTTTGTGCTATTTGGTGTAAAACTTGGTTGA 930 0.4398 MELEMDSTISYSRAGMVAERSFSSNSFSLSQPNDHRSSRFRGVVLLHSGNWGARISIQYQLVWLGTFPTAEEAARAYDTAALKLHKGDSFLNFPWSDHSPQEIMFQSYYSIGEIFKMIKDKSYSSNLATFIADQSLIMNYASDQMYEQGISYQLLFKKALTPRDVAKHPRLLIPKEYALMYFPPITGDVESVQLMFYDKDGIPWTFRYSCWESNQSFVFTTGWKQFVNAKRLKRGETISFYRCGIEEEFEDSAFFMIDVDRGDWESDAIGEHMGEEISVGGNSNNGMDADDKEKEAADKGFVLFGVKLG* 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0008 309 CDD AP2 38 96 IPR001471 GO:0003700|GO:0006355
Vvi2g0008 309 Pfam AP2 domain 39 85 IPR001471 GO:0003700|GO:0006355
Vvi2g0008 309 Pfam B3 DNA binding domain 156 245 IPR003340 GO:0003677
Vvi2g0008 309 SUPERFAMILY DNA-binding domain 38 96 IPR016177 GO:0003677
Vvi2g0008 309 Gene3D - 147 265 IPR015300 -
Vvi2g0008 309 ProSiteProfiles B3 DNA-binding domain profile. 156 263 IPR003340 GO:0003677
Vvi2g0008 309 ProSiteProfiles AP2/ERF domain profile. 39 94 IPR001471 GO:0003700|GO:0006355
Vvi2g0008 309 Gene3D AP2/ERF domain 38 95 IPR036955 GO:0003700|GO:0006355
Vvi2g0008 309 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 36 307 IPR044800 GO:0003700
Vvi2g0008 309 SMART rav1_2 39 100 IPR001471 GO:0003700|GO:0006355
Vvi2g0008 309 CDD B3_DNA 155 249 IPR003340 GO:0003677
Vvi2g0008 309 SUPERFAMILY DNA-binding pseudobarrel domain 154 245 IPR015300 -
Vvi2g0008 309 SMART B3_2 156 252 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0008 Vvi-Chr2 110088 111017 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0008 39 308 RAV Transcription Factor Family AT1G50680 36.364 3.05e-56 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-RAV Vvi2g0008 B3 1.3e-19 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0008 K09287 - vvi:104881027 614.379