Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1623 ATGGGTCGCAGACCTGCACGCTGCTACCGACAAATTAAGAACAAGCCCTATCCCAAGTCTAGATATTGTCGGGGTGTTCCTGACCCTAAGATCAGAATATATGATGTAGGCATGAAAAAGAAGGGTGTGGATGAGTTCCCCTTCTGTGTTCATCTTGTTAGCTGGGAGAAAGAGAATGTGTCCAGTGAAGCCCTTGAAGCTGCCAGGATTGCATGCAACAAATACATGACCAAGTTTGCTGGAAAGGATGCTTTCCACCTCAGGGTGAGAGTCCACCCCTTCCATGTCCTGCGCATAAACAAGATGTTGTCATGCGCCGGAGCAGATAGGCTCCAAACTGGTATGCGGGGGGCCTTTGGAAAGCCCCAAGGGACTTGTGCAAGGGTTAACATTGGGCAGGTGTTGCTGTCTGTTAGATGCAAGGATGGAAATGGGAACCATGCACAGGAGGCGCTGAGGAGGGCCAAATTCAAGTTTCCAGGCAGGCAAAAGATTATCGTAAGCCGAAAGTGGGGCTTTACCAAGTTTAGCCGAGCAGATTATGTCAAGTGGAAGCAGGAGAACAGGATAATGCCTGATGGAGTGAATGCTAAGCTGTTAGGATGCCATGGCCCCCTGGCGCAGAGGCAGCCTGGAAGAGCCTTCCTCAGTGGAGCAGTGGAATCCACTGCTTAG 675 0.5067 MGRRPARCYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMTKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVNIGQVLLSVRCKDGNGNHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYVKWKQENRIMPDGVNAKLLGCHGPLAQRQPGRAFLSGAVESTA* 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1623 224 CDD Ribosomal_L16_L10e 41 166 IPR016180 GO:0003735|GO:0005840|GO:0006412
Vvi1g1623 224 Pfam Ribosomal protein L16p/L10e 12 166 IPR016180 GO:0003735|GO:0005840|GO:0006412
Vvi1g1623 224 ProSitePatterns Ribosomal protein L10e signature. 108 129 IPR018255 GO:0003735|GO:0005840|GO:0006412
Vvi1g1623 224 FunFam 60S ribosomal protein L10 1 206 - -
Vvi1g1623 224 Gene3D Ribosomal protein L10e/L16 1 216 IPR036920 GO:0003735|GO:0005840|GO:0006412
Vvi1g1623 224 PIRSF RPL10a_RPL10e 1 182 IPR001197 GO:0003735|GO:0005840|GO:0006412
Vvi1g1623 224 SUPERFAMILY Ribosomal protein L16p/L10e 4 173 IPR036920 GO:0003735|GO:0005840|GO:0006412
Vvi1g1623 224 NCBIfam 50S ribosomal protein L16 1 174 IPR001197 GO:0003735|GO:0005840|GO:0006412
Vvi1g1623 224 PANTHER 60S RIBOSOMAL PROTEIN L10 1 213 IPR001197 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1623 Vvi-Chr1 22896899 22897573 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1623 1 221 Cytoplasmic Ribosomal Protein Gene Family AT1G66580 86.878 2.11e-144 400
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1623 K02866 - vvi:100241995 468.388