Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1621 ATGACTAGTTCTGCTTCAAAGGTGGGAGAGAGCGGCCTGGTGAAGACGGTAGAGATTGAAGGAAGGGGGAGGGCTCTGGTTGCCTCTCAATCACTCAGAGGCGGCCAAATCATCCTCACAGACTCTCCTATCCTCCTCTATTCCGCACATCCTCTTTCCTCCTCCTCCAACGCTTACTGTTCCAACTGCTTCAGGCACTTACAAACTTGTTCCACCCTCGTCTCCTGCTCTTCATGCCCTTGTCTCTTCTGCTCCCCCGATTGCCTCACTCATGCCCTCTCTTCCTCCCACTCTCCCTGGGCCTGCTTAACCCTATCTCTTTTGCGCGCTTCTCCCTCTCTCTCACTCTCCCATTCCGAACGCCAAGTCCAAGCCCGTTTTCTAGTCGCCGCATACAATCTCGCCATCGTCTCCCCTTCCCACTTCCACATATTGCTTTCTCTTCAAGGCATGGCTCTACCCTCCTCTGATTCTGACGCTCCCACCTTCCTCCATTCCCTCCTCTCTTCCCTCTCTCCTCCTCAGGGCGTTGCCGGATTCTCTGTAGAGCTCACCACCGCTTTGCTCGCCAAGGACAAGCTCAATGCTTTCGGTCTAATGGAGCCTCCCGCACTTGCCCCAGGCGGCGAGAGATCCGTCAGAGCTTATGGAATCTACCCCAAAGCTTCTTTCTTCAACCACGATTGTCTTCCCAATGCTTGCCGATTCGATTATGTCGATACTGCCTCCCACCATAATACTGACATCACCATTAGACTCATTCATGATGTTCCCGAGGGAAGTGAGATTTGTTTGAGTTATTTTCCCGTGAATGAGACTTATGCTGACAGACAGAAGAGGCTGCTGGAAGATTACGGCTTTACCTGTTATTGTGACCGTTGTCGGGTTGAAGCTAATTGGAAAGATGATGATGAGCAAGAGGAGGAGCAGGATGATGAGGGCCAAGTGATGGATGAGGACCAGGATGAACAAATGATTGGTTCAGAAAATGAGATCGAGATTGGAGATGGAGGAGGGGAAAATGATTTCCCTCACGCCTATTTCTTTTTGAGATACATGTGCACTAGAGAAAATTGCTGGGGCACACTGGCTCCATTGCCTCCATCGGATTCAGATGCATCTCCTTCTAATCTCATGGAATGTAACGTCTGTGGAAACTCGAAGAAGTCTGATGAAGACTTCAACAGCGATGAAGACAGGCTCTCTGTGGATGACTGA 1218 0.5049 MTSSASKVGESGLVKTVEIEGRGRALVASQSLRGGQIILTDSPILLYSAHPLSSSSNAYCSNCFRHLQTCSTLVSCSSCPCLFCSPDCLTHALSSSHSPWACLTLSLLRASPSLSLSHSERQVQARFLVAAYNLAIVSPSHFHILLSLQGMALPSSDSDAPTFLHSLLSSLSPPQGVAGFSVELTTALLAKDKLNAFGLMEPPALAPGGERSVRAYGIYPKASFFNHDCLPNACRFDYVDTASHHNTDITIRLIHDVPEGSEICLSYFPVNETYADRQKRLLEDYGFTCYCDRCRVEANWKDDDEQEEEQDDEGQVMDEDQDEQMIGSENEIEIGDGGGENDFPHAYFFLRYMCTRENCWGTLAPLPPSDSDASPSNLMECNVCGNSKKSDEDFNSDEDRLSVDD* 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1621 405 Gene3D - 59 115 - -
Vvi1g1621 405 SUPERFAMILY SET domain 10 289 IPR046341 -
Vvi1g1621 405 CDD SET_SMYD 204 294 - -
Vvi1g1621 405 Gene3D - 116 196 - -
Vvi1g1621 405 Pfam SET domain 146 267 IPR001214 GO:0005515
Vvi1g1621 405 ProSiteProfiles SET domain profile. 12 268 IPR001214 GO:0005515
Vvi1g1621 405 MobiDBLite consensus disorder prediction 301 323 - -
Vvi1g1621 405 SMART set_7 12 274 IPR001214 GO:0005515
Vvi1g1621 405 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ASHR2 10 398 IPR044238 -
Vvi1g1621 405 MobiDBLite consensus disorder prediction 302 323 - -
Vvi1g1621 405 Gene3D SET domain 25 294 IPR046341 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vvi1g1621 SET 1.1e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1621 - - vvi:100252252 750.74