Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1617 ATGAAAAGACCAGAAGACATCCCTGTTCCTTCAAGGGATCTAAGTGTTAGTTTTGGCTATCAATGCAGCACTACCAGCCCTCCCTCTGTTAATGTACCAAATGGAATTGATTTTTCGGATGGGTTCATGATTCAAAATTCTAATATGAAAACGAGGAGTAGTTCGTTTTCTTGTCTGTCTGGTGCTGCTCTTAGTGCTAATGCCACTCTGGCAAACACAAATATCTGTAATGGTTTTATTGGAGAGGAGATCCTGCCTAGTCTTGATTCGCCAAGATCATTTAAAAGAATGGCATCTTCCCCCTCTCTTTCACGAGTAGACTCTGTCTTCTCATCCTCTCAAAGCAGTATGACTACATTAGGTGGAAGTGCATCAACAGAGAATGACTTTGTTGAAAGTGAAAGGAACTTGTGGAAATCAATGAGTGCTCCTACCAGAATAGAATCCTCCAGCTTTCTCAATGCGATTGACGTACAAATGGCTGGTGGAGCTGCAGGTGAGGACAGAGTCCAAGCTGTGTGTTCTGAAGAAAATGGATGGCTCTTCTGTGGCATATATGATGGATTTAATGGTCGGGATGCTGCTGACTTTTTAGCTGGAACTCTTTATGAGAACATTGGGTTTTATCTTCATTTGCTGGAATGGCGTGCAAAAAAGCAGCATGATCCATTTGAAAGTACCTTAGAAGATGACACAGTCAGGAATGAAATGTTTGGGCATATTGCACCCAACATTTCAGATTCTGGAGGGGTAGGAACTATCGTTCCACATTCTTCAGGTGGAGAATTCACATGTGAACAGTTCCACCATAGTGTGACGGATTGCCTTATTCGGGCTGTTGCCCAAGCTGAAAGTGATTTTATGTACATGGTTGAACAGGAAATGGAAGATCGGCCTGACCTAGTGTCTGTTGGATCATGCATCTTGGTGGGGCTTCTTCATGGGAACAACTTCTATGTTTTAAATTTAGGTGATAGCAGGGCCATACTAGCAACAAATGAGACTCGAGAGGATGGTAAATTGAAGGTCATCCAGCTGACAGAAACTCATAGTGTGGACAATGAAATCGAATATAGAAAACTTTTGGATGATCACCCTGAAGATCCTTCACCTGTCATTAATGGAAGAGTGAAAGGAAAGCTAAAGCTAACCCGGGCATTTGGAGTTGGTTATCTTAAAAAGAGCAAAATGAATGATATGCTGATGGGCATTCTTCGAGTACGAAATTTGTGCAGTCCTCCTTATGTTTACACACATCCATTCACCATGAGCCATACAGTGTCAGAGAAAGATCAATTCATTGTTTTGGGAAGTGATGGACTCTTTGATTTCTTCAGCAATGATGAAGTTGTGCAACTTGTGCATCTTTTTATTCAGCATAACCCCTCTGGTGATCCTGCAAAACATCTGGTTGAACAGCTCATCCTCAAAGCAGCTGATAATGCAGGCTTCAGTACTGAAGAGTTGATGATGATACCTGCTGGGAGAAGAAGGAAGTACCATGACGATGTTACTGTTATTGTAATCATGCTTGGTAATAAGCAATGGACTTCTACTGCTTCAACATCTCTGTAG 1575 0.4184 MKRPEDIPVPSRDLSVSFGYQCSTTSPPSVNVPNGIDFSDGFMIQNSNMKTRSSSFSCLSGAALSANATLANTNICNGFIGEEILPSLDSPRSFKRMASSPSLSRVDSVFSSSQSSMTTLGGSASTENDFVESERNLWKSMSAPTRIESSSFLNAIDVQMAGGAAGEDRVQAVCSEENGWLFCGIYDGFNGRDAADFLAGTLYENIGFYLHLLEWRAKKQHDPFESTLEDDTVRNEMFGHIAPNISDSGGVGTIVPHSSGGEFTCEQFHHSVTDCLIRAVAQAESDFMYMVEQEMEDRPDLVSVGSCILVGLLHGNNFYVLNLGDSRAILATNETREDGKLKVIQLTETHSVDNEIEYRKLLDDHPEDPSPVINGRVKGKLKLTRAFGVGYLKKSKMNDMLMGILRVRNLCSPPYVYTHPFTMSHTVSEKDQFIVLGSDGLFDFFSNDEVVQLVHLFIQHNPSGDPAKHLVEQLILKAADNAGFSTEELMMIPAGRRRKYHDDVTVIVIMLGNKQWTSTASTSL* 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1617 524 SMART PP2C_4 139 509 IPR001932 -
Vvi1g1617 524 PANTHER PROTEIN PHOSPHATASE 2C 148 509 IPR015655 GO:0004722|GO:0006470
Vvi1g1617 524 Pfam Protein phosphatase 2C 272 466 IPR001932 -
Vvi1g1617 524 SUPERFAMILY PP2C-like 165 513 IPR036457 -
Vvi1g1617 524 Gene3D - 129 520 IPR036457 -
Vvi1g1617 524 ProSiteProfiles PPM-type phosphatase domain profile. 152 511 IPR001932 -
Vvi1g1617 524 FunFam Probable protein phosphatase 2C 40 131 520 - -
Vvi1g1617 524 CDD PP2Cc 165 509 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1617 Vvi-Chr1 22854790 22856895 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1617 10 522 PP2C-type Phosphatase Gene Family AT3G16560 55.922 0.0 545
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1617 - - vvi:100264381 1023.85