Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vvi1g1606 | ATGGCGGGAGAAGCTTCGAACTCGGATCCACATCCACGGCCTAGCGATTCCGACGCTGGTAATTCCGGAAATCCACCATCCACACCCGATTCGCCCACCTCTGCTGGTTTCAACACCGATCAACTCCCTCCCAGCCGCACTTCCGAGAACTACTCCGACGAAGATGAGGCCGCCGTCGATCCCCACATCATCAGAGACGAACCAGAAGATGTGGAGGACGAGGAGGAAGGCGAGGATCTTTACAACGACAATTTCATGGACGATTATCGGAGGATGGATGAGCACGACCAGTATGAATCGTTGGGACTTGACGAGTCTCTGGAAGATGAGAGGGATTTGGATCAGATCATGGAGGATCGAAGGGCTGCTGAGATGGAGCTCGACACTAGAGATACTCGCATAACTGAGACGAAGCTTCCTCGTCTTCTTCTCGACCAAGATACTGATGATGACAACCATAGGCCTTCAAAAAGATCAAGAGCAGATTTTAGGCCTCCAGCTGCAGCAAGAAGCTATGATGATGCTGATGCGATGTTAAGTTCACCAGGAAGGTCACGAGGACACTCACGAGAGGATGTTCCCATGACTGATCAGACTGATGATGAACCATACGAGGATGATGATGATGATGATGGTGAGTTCGAGATGTACCGTGTTCAAGGAACGCTAAGGGAATGGGTTACTAGAGATGAAGTGCGCCGCTTCATTGCAAAGAAGTTTAAGGAATTCTTACTCACCTATGTGAACCCAAAGAATGAACATGGTGATTTTGAATATGTGCGACTGATAAATGAGATGGTCTCAGCTAACAAGTGTAGTTTGGAGATTGATTACAAACAGTTCATCTATATCCATCCCAATATTGCTATCTGGCTGGCTGATGCCCCTCAATCTGTCCTTGAGGTCATGGAAGACGTAGCCAAGAATGTTGTCTTTGATTTACATCCAAACTACAAAAATATTCACCAAAAGATCTACGTCCGCATCACCAACTTACCGGTTTATGATCAGATACGCAACATACGGCAGATTCATTTGAACACCATGATTCGTATTGGGGGAGTTGTAACCCGACGTTCTGGGGTCTTCCCACAGTTACAGCAGGTAAAGTATGACTGCAACAAATGTGGAATGATTCTGGGGCCATTCTTCCAGAATTCATATTCAGAAGTCAAGGTTGGGTCTTGCCCAGAATGCCAATCAAAAGGACCATTCACTGTCAATATCGAGCAGACGATATACAGGAACTATCAAAAACTCACTCTCCAGGAGAGCCCAGGTATCGTGCCAGCAGGTCGTCTTCCTAGATACAAGGAAGTGATACTCTTGAACGATTTGATTGATTGTGCCCGCCCGGGGGAAGAGATTGAGGTCACAGGTATTTACACGAATAATTTTGACCTCTCCCTGAATACGAAGAATGGATTTCCTGTATTTGCCACTGTAGTCGAGGCAAATTATGTCACAAAGAAGCAGGATCTCTTTTCTGCTTACAAACTTACCCAGGAGGACAAAGAGGAAATTGAGAAGTTGGCTAAAGATCCCAGGATTGGAGAAAGGATTGTCAAGTCCATTGCACCATCAATCTATGGCCACGAGGATATAAAAACTGCAATGGCTCTTGCAATGTTTGGAGGCCAAGAAAAAAATGTTGAAGGGAAACATAGGTTGCGAGGAGACATAAATGTACTTCTCCTTGGTGATCCAGGCACTGCCAAATCACAGTTTTTAAAGTATGTTGAAAAGACTGGGCAGAGAGCTGTGTATACCACTGGTAAAGGTGCTTCCGCTGTGGGTCTCACAGCATCAGTACACAAGGATCCTGTCACACGCGAATGGACACTTGAAGGAGGGGCTCTTGTTCTAGCAGATAAAGGAATCTGTCTAATTGATGAGTTTGACAAGATGAATGATCAAGACAGAGTGAGCATCCACGAAGCAATGGAACAGCAGAGTATTAGCATATCAAAGGCTGGGATTGTCACTTCTCTCCAGGCTCGCTGCTCTGTCATTGCTGCTGCAAATCCAATTGGAGGAAGATATGATTCCTCGAAGACATTTTCACAAAATGTTGAATTGACAGATCCAATCGTTTCTCGGTTTGATGTCCTCTGTGTTGTCAAGGACGTTGTTGACCCAGTCACAGACGAGATGCTTGCAAAGTTTGTGGTTGATAGTCATTTCAAGTCACAACCCAAGGGCACTAATGTAGAGGATAAGTCCTTGAGCAATTCCCAAGATGATATTCAACCATCTGCCAGGCCTCTTGATCCTGAGATACTCTCTCAAGATTTGCTGAAGAAATACTTGACTTACGCTAAGTTGAATGTCTTCCCAAGGTTGCATGACGCAGATCTGAACAAGCTCACACATGTTTATGCTGAGCTGCGGAGAGAATCTTCGCATGGACAAGGAGTCCCAATAGCAGTAAGGCATATAGAATCAATGATACGGATGTCTGAAGCACATGCCAGAATGCACCTCAGACAGCATGTTACCCAGGAAGATGTTGACATGGCTATTCGTGTCCTGCTTGATTCTTTCATTTCAACACAAAAATTCGGGGTGCAGAAAGCCCTACAAAAGAGCTTCAAAAAGTACATGACCTTCAAAAAGGATTACAATGAACTGCTCCTGTATCTCCTAAGAGGGCTTGTCAAGGATGCACTGCACTTTGAAGAGATTGTATCTGGGTCAAGTTCAGGACTTCCCCATATTGATGTGAAAGTGGAGGAGTTGCAAAGCAAGGCACAGGATTATGAAATCTATGATCTTAAACCATTCTTTTCAAGCACTCAGTTCTCTAGGGCCCACTTTGAGTTGGATGCAGAGCGGGGTGTGATCAGGCATCGCCTTGCAAGATGA | 2865 | 0.4531 | MAGEASNSDPHPRPSDSDAGNSGNPPSTPDSPTSAGFNTDQLPPSRTSENYSDEDEAAVDPHIIRDEPEDVEDEEEGEDLYNDNFMDDYRRMDEHDQYESLGLDESLEDERDLDQIMEDRRAAEMELDTRDTRITETKLPRLLLDQDTDDDNHRPSKRSRADFRPPAAARSYDDADAMLSSPGRSRGHSREDVPMTDQTDDEPYEDDDDDDGEFEMYRVQGTLREWVTRDEVRRFIAKKFKEFLLTYVNPKNEHGDFEYVRLINEMVSANKCSLEIDYKQFIYIHPNIAIWLADAPQSVLEVMEDVAKNVVFDLHPNYKNIHQKIYVRITNLPVYDQIRNIRQIHLNTMIRIGGVVTRRSGVFPQLQQVKYDCNKCGMILGPFFQNSYSEVKVGSCPECQSKGPFTVNIEQTIYRNYQKLTLQESPGIVPAGRLPRYKEVILLNDLIDCARPGEEIEVTGIYTNNFDLSLNTKNGFPVFATVVEANYVTKKQDLFSAYKLTQEDKEEIEKLAKDPRIGERIVKSIAPSIYGHEDIKTAMALAMFGGQEKNVEGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGASAVGLTASVHKDPVTREWTLEGGALVLADKGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPIGGRYDSSKTFSQNVELTDPIVSRFDVLCVVKDVVDPVTDEMLAKFVVDSHFKSQPKGTNVEDKSLSNSQDDIQPSARPLDPEILSQDLLKKYLTYAKLNVFPRLHDADLNKLTHVYAELRRESSHGQGVPIAVRHIESMIRMSEAHARMHLRQHVTQEDVDMAIRVLLDSFISTQKFGVQKALQKSFKKYMTFKKDYNELLLYLLRGLVKDALHFEEIVSGSSSGLPHIDVKVEELQSKAQDYEIYDLKPFFSSTQFSRAHFELDAERGVIRHRLAR* | 955 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vvi1g1606 | 954 | MobiDBLite | consensus disorder prediction | 67 | 82 | - | - | |
| Vvi1g1606 | 954 | MobiDBLite | consensus disorder prediction | 198 | 212 | - | - | |
| Vvi1g1606 | 954 | MobiDBLite | consensus disorder prediction | 1 | 212 | - | - | |
| Vvi1g1606 | 954 | Gene3D | - | 230 | 334 | - | - | |
| Vvi1g1606 | 954 | FunFam | DNA helicase | 497 | 871 | - | - | |
| Vvi1g1606 | 954 | Pfam | MCM AAA-lid domain | 764 | 848 | IPR041562 | - | |
| Vvi1g1606 | 954 | ProSitePatterns | MCM family signature. | 626 | 634 | IPR018525 | GO:0003677|GO:0005524|GO:0006260 | |
| Vvi1g1606 | 954 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER | 223 | 899 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Vvi1g1606 | 954 | Pfam | Mini-chromosome maintenance protein 2 | 54 | 209 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Vvi1g1606 | 954 | Pfam | MCM OB domain | 337 | 464 | IPR033762 | - | |
| Vvi1g1606 | 954 | MobiDBLite | consensus disorder prediction | 113 | 169 | - | - | |
| Vvi1g1606 | 954 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 370 | 382 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Vvi1g1606 | 954 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 481 | 492 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Vvi1g1606 | 954 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 466 | 477 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Vvi1g1606 | 954 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 347 | 364 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Vvi1g1606 | 954 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 405 | 419 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Vvi1g1606 | 954 | CDD | MCM2 | 520 | 847 | - | - | |
| Vvi1g1606 | 954 | FunFam | DNA helicase | 365 | 415 | - | - | |
| Vvi1g1606 | 954 | ProSiteProfiles | MCM family domain profile. | 517 | 723 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Vvi1g1606 | 954 | Pfam | MCM N-terminal domain | 238 | 331 | IPR027925 | - | |
| Vvi1g1606 | 954 | MobiDBLite | consensus disorder prediction | 49 | 66 | - | - | |
| Vvi1g1606 | 954 | Pfam | MCM P-loop domain | 505 | 727 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Vvi1g1606 | 954 | MobiDBLite | consensus disorder prediction | 731 | 751 | - | - | |
| Vvi1g1606 | 954 | SUPERFAMILY | Nucleic acid-binding proteins | 239 | 486 | IPR012340 | - | |
| Vvi1g1606 | 954 | Gene3D | - | 365 | 415 | - | - | |
| Vvi1g1606 | 954 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 618 | 632 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Vvi1g1606 | 954 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 697 | 705 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Vvi1g1606 | 954 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 670 | 682 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Vvi1g1606 | 954 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 558 | 573 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Vvi1g1606 | 954 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 646 | 659 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Vvi1g1606 | 954 | FunFam | DNA helicase | 230 | 334 | - | - | |
| Vvi1g1606 | 954 | MobiDBLite | consensus disorder prediction | 731 | 755 | - | - | |
| Vvi1g1606 | 954 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 527 | 851 | IPR027417 | - | |
| Vvi1g1606 | 954 | Gene3D | - | 338 | 463 | IPR012340 | - | |
| Vvi1g1606 | 954 | MobiDBLite | consensus disorder prediction | 83 | 104 | - | - | |
| Vvi1g1606 | 954 | Gene3D | - | 497 | 871 | IPR027417 | - | |
| Vvi1g1606 | 954 | MobiDBLite | consensus disorder prediction | 10 | 48 | - | - | |
| Vvi1g1606 | 954 | SMART | mcm | 334 | 849 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vvi1g1606 | Vvi-Chr1 | 22756441 | 22762831 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vvi1g1606 | 21 | 949 | Core DNA Replication Machinery Family | AT1G44900 | 78.992 | 0.0 | 1433 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vvi1g1606 | K02540 | - | vvi:100266163 | 1827.37 |