Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1600 ATGGACGGCAATATTGGAATGGAAGATGTTGGGACGGCAGTGCTGCAGGAACTGTGGAATAGAGTGACCCTTCAAGCTATGGTGTTTGTTGGTGAAACAAGTGACATGGTGTTTGAAAAGGGGTTCTTCCAAGAATTTTCCAAGAGCATATCTGAGCTAAGGGTCCTCTTGCAAGCCTTGAATGTTGAGAAGGTTGAAGCAGCAATGAGTGTGAGACCAACGAAAACCGCATTGGAGACCTTGGATTCTCAGCTGAAGAGAGCCTGCAAGATCATCAAAGACTACAAATCCAGGAGCAGCCTCAGTGTCTTACTTCAGTCGCGATCTGTGCTCTCACAGATGAAAGCTTTGGCTGAAGAGATTGCTAAGACAATATCTTCATGGCAACTTGTCAATCTCAATATCTCCGTCAATTTAAAATCCAAGACTGAACAAATAATTAACAGTCTGAGTTCAATGGAGTTCCATTCAGCGGTTGCAACAGAATCCCTTGCTACAGAGATAGAGAAATTGATAAATGAGAATGGCAGGAACCGACAAAATGCTATAAAGCTCCTGCAGAAGATTGGAGAAGCAGTTGGTGTGAGCTCAAATGCATCCCTGGTTCAGAATGAGCTGGCACTTTTGAAGAAGGAGAAAGAAGAGATGGAAGCTCAAAAGAAACAGGCAGAGGCATTTCAGTTATCTCAACTGATGCAGTTTTTGTATAGTACAGAAATTGTTATGAGCCCTCAAGATGAGGAAATTGCTGCATACCATCACCAATATCCAACTGAGTCTTTCAGATGCCCATTGTGCAAAGAGATGATGAGTGACCCAGTTGCAATCGTCTGTGGGCACAGCTTTGAGAGGAAGGCGATTCAGGAACATTTCTGGAGGGGAGAGAAGACCTGCCCCATATGCAGAGAAAGGCTCAGGTCCACGGAGCTTACTCCAAATCTTTCGCTTCGGAGCTCTATAGAAGAATGGAAGCAAAGAGACATGGACTTAAAATTCCAAGCTGCGCTCCCTGGAATCACCTCCAATGACCACTCTATACAGAACAGGGCCCTGAAGGAGATGCAAGTTCTGATGGAAAGGCCACGCTATACAGAAAAAGTTGCAGAGGAAGGCCTCATCTCAAAATTTGTGGAAATGCTCAAGAACAATCAGCCAAACAGAATTGCTGCACTGAAATGCCTTTTTTACTTGGCTAAATACTGTGATAATCACAAGGAGGCCATCATTGAAGCAGGAGCTGTTCGCTGCATTGTGAGGCAGTTCTATAAAGGTGAAGCAGAACCTGATGCTGTTGCAGTCTTGTTGGAGCTGTCAGCAAGAGAAGCCCTTGCAGAAAAAATAGGGAATATCAGAGACTGCATTCCTGTTTTGGTATCTTTGCTCAATTACAGTAATCCTGATGTGTCACAGAAAGCCCATAAGGTGTTGCAGAACCTCTCCTACAACACTCACTTTGTAGTCAAGATGGCTGAAGCTGGATACTTCCAACAATTTGTTGCCCGCTTCAACCAAGGACCCCATGAAACCAGAGCATCGATGGCTGCGGCCTTAATACAAATGGAACTCAAGGGGAACAGCATTAGGGAATTAGAAGACAAAACATTCATACACAACCTAGTCCAAATGCTTTCATCAAGTTCTCGAGCATGCATTTCAGCTGGCCTCAAATTAATCAAGAAGCTCGTAGCTTTCCCCAGGATGGTAAAGCGGCTTCTGGCAGATCCTGCCACAGTACCACCTTTGCTTGGCCTCATCTCAATTGTCAAGACCGACCCATGCTGGAACCAAGAAGCTGCTGCAATCCTTGCTCTACTGGTGGAAGGCAGTCAGTTCACTGAACACCAGATGTATCAGGGTTTGCAGGAATTGCAATCACAGCACAATATCAATCTCTTTTTGCAGCTCATAGCCAGTTCTGATCCCCAAACCAAGGTTCAGCTTTTGCACTTGCTGGTTGTTCTGGGCAATAAATTCGAAATGGCTAGAAACCTGATACGAACAGATAATGAAGCAATTTCCTACCTTTTTTCTTCCCTTGAAGGTGATCAGCTTGAGGTGAAACTATGGGCTATGAAACTCGTATACTGCATTTCTGAAGGTCATCCTGCTGGAGTTCCACTTCCACCATCCCCTGCAAAAGAAACAGCCATCAAAACCCTGGCAAACATCCTTTCAAATTCACCCAATATTGAAGAAAGATCCACTGCAGCTGGAATCATCAGCCAGCTTCCCAATGATGATATCATCATTGATGAGATACTATGTAAATCAGAGGTATTAAAAGCCATTCATGGAGTGATTTGCAACCTTGATGAGGAAAGCGATGGGACCAGAGCACCAGACAATTCAGACGCATCCTTACTGGAGAATGCTCTGGCAGCACTGCTACGCTACACAGAACCCACTAAGCCACAACTTTATAGGCAAGTGGGCAAGCTTGAATTGTATCCATTGCTGGTTCGCATCCTATCTAGGGGCAGCTCGCTAGCCAAGCAGCGGACAGCCACTGCACTTGCCCACCTATCCCGATCAACCAGCTTGTCAATCTCTGATTCAACTATCACGCGACAACAAGCTTTTCCACTGCTAAATGTAATGAAGTTCTTCTCCGGTATGTCCTGTTGCAGCTCAGAAATGGCAGAATGTGTAAACCTGTGTAGGGTTCATGGTGCTGCTTGTTCATCAAGGGACACATTCTGCCTTGTCAAGGTGGATGCACTGAAGCCACTAGTGCAAAATTTGAGTGAGAAAGAATCTGGTGTGGCAGAGGCTGCTTTGATGGCACTTGAAACTCTGCTAACAGACCACAGCACACTTCCCCATGCAACTGCTGCCATTGTGGATAGCCAGGGAGTGGTGGCCATTCTCCAAGTCCTGGAGAAGGGCGATTTGCCTGCCAAAATCAGAGCCCTAGACCTGTTCCAGAAGATCCTGGAGCATACAAGGATGAATGGCCCATTAGCTGAGAGGGCTGAAAGGATCCTTGTCCAGCTCCTACAAGATGATGATCTCAGGAAGAAAGTGGCTTTGGTGCTCAAGCAGATGGGCATCCTACCGGAGCAGTCTTCCTACTTTTAA 3078 0.4571 MDGNIGMEDVGTAVLQELWNRVTLQAMVFVGETSDMVFEKGFFQEFSKSISELRVLLQALNVEKVEAAMSVRPTKTALETLDSQLKRACKIIKDYKSRSSLSVLLQSRSVLSQMKALAEEIAKTISSWQLVNLNISVNLKSKTEQIINSLSSMEFHSAVATESLATEIEKLINENGRNRQNAIKLLQKIGEAVGVSSNASLVQNELALLKKEKEEMEAQKKQAEAFQLSQLMQFLYSTEIVMSPQDEEIAAYHHQYPTESFRCPLCKEMMSDPVAIVCGHSFERKAIQEHFWRGEKTCPICRERLRSTELTPNLSLRSSIEEWKQRDMDLKFQAALPGITSNDHSIQNRALKEMQVLMERPRYTEKVAEEGLISKFVEMLKNNQPNRIAALKCLFYLAKYCDNHKEAIIEAGAVRCIVRQFYKGEAEPDAVAVLLELSAREALAEKIGNIRDCIPVLVSLLNYSNPDVSQKAHKVLQNLSYNTHFVVKMAEAGYFQQFVARFNQGPHETRASMAAALIQMELKGNSIRELEDKTFIHNLVQMLSSSSRACISAGLKLIKKLVAFPRMVKRLLADPATVPPLLGLISIVKTDPCWNQEAAAILALLVEGSQFTEHQMYQGLQELQSQHNINLFLQLIASSDPQTKVQLLHLLVVLGNKFEMARNLIRTDNEAISYLFSSLEGDQLEVKLWAMKLVYCISEGHPAGVPLPPSPAKETAIKTLANILSNSPNIEERSTAAGIISQLPNDDIIIDEILCKSEVLKAIHGVICNLDEESDGTRAPDNSDASLLENALAALLRYTEPTKPQLYRQVGKLELYPLLVRILSRGSSLAKQRTATALAHLSRSTSLSISDSTITRQQAFPLLNVMKFFSGMSCCSSEMAECVNLCRVHGAACSSRDTFCLVKVDALKPLVQNLSEKESGVAEAALMALETLLTDHSTLPHATAAIVDSQGVVAILQVLEKGDLPAKIRALDLFQKILEHTRMNGPLAERAERILVQLLQDDDLRKKVALVLKQMGILPEQSSYF* 1026
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1600 1025 Gene3D - 323 660 IPR011989 -
Vvi1g1600 1025 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 251 322 IPR013083 -
Vvi1g1600 1025 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 16 1025 - -
Vvi1g1600 1025 SUPERFAMILY ARM repeat 437 770 IPR016024 -
Vvi1g1600 1025 SUPERFAMILY RING/U-box 257 326 - -
Vvi1g1600 1025 Gene3D - 882 1022 IPR011989 -
Vvi1g1600 1025 SMART Ubox_2 260 323 IPR003613 GO:0004842|GO:0016567
Vvi1g1600 1025 SUPERFAMILY ARM repeat 336 421 IPR016024 -
Vvi1g1600 1025 Coils Coil 199 229 - -
Vvi1g1600 1025 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 452 482 IPR000225 GO:0005515
Vvi1g1600 1025 SMART arm_5 360 399 IPR000225 GO:0005515
Vvi1g1600 1025 SMART arm_5 401 439 IPR000225 GO:0005515
Vvi1g1600 1025 SMART arm_5 893 934 IPR000225 GO:0005515
Vvi1g1600 1025 SMART arm_5 443 481 IPR000225 GO:0005515
Vvi1g1600 1025 SMART arm_5 803 843 IPR000225 GO:0005515
Vvi1g1600 1025 SMART arm_5 939 979 IPR000225 GO:0005515
Vvi1g1600 1025 Pfam U-box domain 259 325 IPR003613 GO:0004842|GO:0016567
Vvi1g1600 1025 ProSiteProfiles Zinc finger RING-type profile. 263 302 IPR001841 -
Vvi1g1600 1025 Gene3D - 662 881 IPR011989 -
Vvi1g1600 1025 ProSiteProfiles U-box domain profile. 256 330 IPR003613 GO:0004842|GO:0016567
Vvi1g1600 1025 SUPERFAMILY ARM repeat 781 1009 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1600 Vvi-Chr1 22733454 22736694 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1600 259 1025 U-box Gene Family AT1G76390 28.342 2.24e-52 196
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1600 - - vvi:100243730 1906.72