Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1598 ATGGTTCTTCCCAACGATATTGATTTGCTGAACCCTCCGGCGGAGATTGAGAAGAGGAAGCACAAGCTGAAGCGTCTCGTGCAGTCCCCCAATTCCTTCTTCATGGATGTCAAGTGCCAGGGTTGCTTCAACATAACAACTGTGTTCAGCCACTCTCAAACTGTTGTTGTGTGTGGAAACTGCCAGACGGTGTTGTGCCAGCCCACAGATGTATGGTTCGTGTGTGCGAGGTGCGTGCGCGCCCTTTATTTTGATTGGCGTGCATTAATACAAGTATATTCTCTTTGCCTATCAAGAGAAAAAGAAAATTGCGAGGCATTGGGCATTTGCATTATGTGTGATTGCTCACCATTGGGCTGGGCAATTTTGTAG 372 0.4731 MVLPNDIDLLNPPAEIEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTDVWFVCARCVRALYFDWRALIQVYSLCLSREKENCEALGICIMCDCSPLGWAIL* 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1598 123 Pfam Ribosomal protein S27 30 69 IPR000592 GO:0003735|GO:0005840|GO:0006412
Vvi1g1598 123 Gene3D - 6 73 IPR023407 -
Vvi1g1598 123 FunFam 40S ribosomal protein S27 1 83 - -
Vvi1g1598 123 PANTHER 40S RIBOSOMAL PROTEIN S27 1 69 IPR000592 GO:0003735|GO:0005840|GO:0006412
Vvi1g1598 123 SUPERFAMILY Zn-binding ribosomal proteins 30 69 IPR011332 GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1598 Vvi-Chr1 22715235 22717054 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1598 1 69 Cytoplasmic Ribosomal Protein Gene Family AT3G61110 95.652 1.27e-45 141
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1598 K02978 - vvi:100248991 148.288