Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1593 ATGGGTTCCTTTTGCTGCTGTCCATGTGGTGACGAATTTGAAGAATATGCTAATCCAAGTAACTCAATATATAGGCACTGCATATGTCTAAGATTCTTTTTCCAGCAGCTATTCAGTGGGTATACTGCAATTTCTCATAGACCTGATGGACGATCAGTACCATCACCAATTCAAGGAGCTACTTCTTTGGCATCATCAGGGATTGGCACAGCATTACCAGATAGTTCCTTAAGTGATACTCATCACCCTGTCTCAAGGACAGCACCTTATGACGCTGAACAAAGATACTCTCGTTTGCAGCGTGATGGTTTGGTATCCAGGCGTGATAAGTCAATGACTCACTTCCAGGACGGTTCACAGCCACTGAGAAGAAATATAAGCAGTTCTGGTATGGAGCCACTGGGCTTTGGAAAGAAAAATTATGGAGTTGAAACTGAAGAAGATGGTAAACTTGCGCAGTCCGAGGCCTCAGAGAAGACTTTGGCAACAAAAGCTGCACATGGACTAGCTTATATACAAACAACTTCTGAAGATGAAGATGTCTGCCCCACATGTCTTGATGAATATACGCCCGAAAATCCTAAAATCACAACACAGTGCTCTCACCATTTTCACCTTGGCTGTATATATGAATGGATGGAAAGAAGTGAAAGCTGTCCAATTTGTGGCAAGGAGATGGAATTCTGTGAAAGCCCATAA 699 0.4278 MGSFCCCPCGDEFEEYANPSNSIYRHCICLRFFFQQLFSGYTAISHRPDGRSVPSPIQGATSLASSGIGTALPDSSLSDTHHPVSRTAPYDAEQRYSRLQRDGLVSRRDKSMTHFQDGSQPLRRNISSSGMEPLGFGKKNYGVETEEDGKLAQSEASEKTLATKAAHGLAYIQTTSEDEDVCPTCLDEYTPENPKITTQCSHHFHLGCIYEWMERSESCPICGKEMEFCESP* 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1593 232 MobiDBLite consensus disorder prediction 113 141 - -
Vvi1g1593 232 MobiDBLite consensus disorder prediction 48 93 - -
Vvi1g1593 232 Pfam Ring finger domain 181 222 IPR001841 -
Vvi1g1593 232 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 142 228 IPR013083 -
Vvi1g1593 232 SMART ring_2 182 222 IPR001841 -
Vvi1g1593 232 SUPERFAMILY RING/U-box 169 227 - -
Vvi1g1593 232 CDD RING-H2_AIRP1-like 178 226 - -
Vvi1g1593 232 FunFam RING/U-box superfamily protein 136 228 - -
Vvi1g1593 232 ProSiteProfiles Zinc finger RING-type profile. 182 222 IPR001841 -
Vvi1g1593 232 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 76 230 - -
Vvi1g1593 232 MobiDBLite consensus disorder prediction 55 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1593 Vvi-Chr1 22675938 22680959 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1593 1 232 C3H Transcription Factor Family AT5G15790 46.025 6.93e-62 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1593 - - vvi:100247128 492.656