Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1590 ATGCGTAAGTGTAATTACCTTGTCCCTTTGCACATTCTTCATGTCGCTAAGCTAATTGGCCCTTGGGTTCATGCATGTAGGGAGAATGTAACAGTTCCTCGAGATAAGCCATACGTATATTTGAAGGGTCACCAGAGATCTACCACAATAGTTGCTGGGAGGAGCTCTGGCAACCTTTGGGAAGCTACTTTGATGAATACATTCAACGTTGCTGGCTCAATCCTCGGAAATGATGTGAAGCCTGCTGTGGCCGTCTCTGTGCAAGGAGACAAGAATTCTTTCTACCGATGTGCCTTTATTGGTCTACAAGATACATTATTTGATGCAATTGGTCGGCATTTCTTCCGGTCTTGCTACATTGAAGGTGCAGTTGACTTCATCTTTGGTGATGGAACCTCAATGGTGATTGGGACTGGTCCAACATATCTTGGTAGAGCATATGGGGCTTATTCAAGAGTCCTGTTTTATAAATCCACGCTTTCAGGCTCTGTGGACCCAAAGGGATGGGACCCTTGGAATTTTGTAGGTCATGAGAACCAACTGACTTATGCAGAGGTTGATTGTCGTGGTGATGGAGCTAATACCTCACAACGAGTTAGTTGGGAGAAAACACTAAGCCCCTCTGAGTTGAAAAGTCTTATCAGCACATCGTTCATCGACAATGAGGGATGGCTAGCAAATCAGCCCCTTTCTGCCTAA 699 0.4506 MRKCNYLVPLHILHVAKLIGPWVHACRENVTVPRDKPYVYLKGHQRSTTIVAGRSSGNLWEATLMNTFNVAGSILGNDVKPAVAVSVQGDKNSFYRCAFIGLQDTLFDAIGRHFFRSCYIEGAVDFIFGDGTSMVIGTGPTYLGRAYGAYSRVLFYKSTLSGSVDPKGWDPWNFVGHENQLTYAEVDCRGDGANTSQRVSWEKTLSPSELKSLISTSFIDNEGWLANQPLSA* 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1590 232 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 139 226 - -
Vvi1g1590 232 ProSitePatterns Pectinesterase signature 2. 120 129 IPR033131 -
Vvi1g1590 232 Pfam Pectinesterase 138 220 IPR000070 GO:0030599|GO:0042545
Vvi1g1590 232 Pfam Pectinesterase 27 134 IPR000070 GO:0030599|GO:0042545
Vvi1g1590 232 SUPERFAMILY Pectin lyase-like 27 225 IPR011050 -
Vvi1g1590 232 Gene3D - 18 135 IPR012334 -
Vvi1g1590 232 Gene3D - 136 232 IPR012334 -
Vvi1g1590 232 FunFam Pectinesterase 131 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1590 Vvi-Chr1 22666634 22667976 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1590 28 225 Carbohydrate Esterase AT1G05310 30.888 4.20e-36 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1590 - - vvi:104880995 399.823