Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1581 ATGGCGCACGGTAGCGACCTCCCGTGTGACGGCGACGGAGTCTGCATGATCTGTCGGAGGAAGCCCTCCGACGACGAGTCTATCACGTGCAAAACATGTGCCACGCCCTGGCACGTCACGTGCCTCTCGGTCCGTCCCGAAACCCTAGCGGATGCTCTCCAGTGGCAGGTTGCTGATGCTCTCCAGTGGGAGTGTCCTGACTGCTCTCCGGCGGTCGGTGAGCGGGATCCGCCGGAGGTGTCTGAGACAGCGGTTGCGGCTGGAGGATCGGAGGGATCCGGTGACTTGATTGCAGCGATTCGGGCGATCGAGTCGGATGGGTCGTTGACCGAGCAGGAGAAGGCGAAGAGGAGGCAGGAGCTGTTGAGCGGAACTGTGCGATCGGGGTCGCCGGAGGAGGGGAGCCCGAATAAGAGGAAGAATGGTGGGAGGGATGTTCTCGATATTCTCGACGGGAGTTTGAACTGTTCCGTTTGTATGCAGCTTCTGGAGAGACCGGTAACGACACCATGTGGTCACAACTTTTGCCTTAAATGCTTTGAGAAATGGATTGGGCAAGGAAAGCGCACATGTGCAAATTGCCGCAATGAAATCCCACGCAAGGTTGCAAGCCAACCCCGTATTAATTCTGCCCTTGTTGTTGCCATAAGAATGGCCAAGATGTCAAAATCTGTGACCTCAGTGGGCACATCAAAGGTTTACCATTTTGTCCACAACCAGAACCGACCTGACAAGGCGTACACCACTGAGCGGGCAAAGAAGGCTGGGAAGGCTAATGCTTGTAGTGGAAAGATCTTTGTCACTGTCCCTCCCGATCATTTTGGACCAATTCTTGCAGAGAATGATCCGGAAAGAAATCAAGGTGTGCTGGTTGGTGAAAGCTGGGAGGACAGGCTGGAGTGCAGGCAATGGGGAGCCCACCTTCCCCATGTTGCAGGGATTGCTGGGCAGTCAGAAGTTGGTGCCCAGTCAGTGGCACTCTCTGGAGGCTACGAAGATGATGAGGATCACGGTGAGTGGTTCCTCTATACTGGAAGTGGTGGGAGAGACCTTAGTGGGAATAAACGCACAAACAAAGAACAGTCATTTGATCAGAAGTTTGAGAAGTCAAATGAAGCACTGAAAGTAAGTTGCCTCAAGGGGTATCCTGTTCGAGTTGTGAGATCCCACAAGGAAAAGCGTTCTTCTTATGCCCCAGAAACAGGAGTGCGGTATGATGGAATCTACAGAATAGAGAAATGTTGGCGAAAAGTTGGAATACAAGGTTTTAGAGTGTGCAGATATCTTTTTGTTCGATGTGACAATGATCCTGCCCCATGGACAAGTGATGACCATGGAGACCGTCCAAGACCATTGCCTGTTATCAAGGAGTTAAAGAATGCAACCGATACAAGTGAAAGGAAAGGAACACCATCTTGGGATTATGATGAGACAGAAGGTCGATGGATGTGGAAGAAACCTCCACCAGCTAGCAGGAAACAAGGGGATGGTGGGGGAACTGTAGTCAGGAAAATTCAGCGGCATAAACAAATTTTGTCTGCCAAGGAAAGGCTTCTAAATGAATTCAGATGCCTTATGTGTCGGAATGTAATGGTTCTTCCACTCACGACCCCCTGTGCCCATAATTTTTGTAAGTCTTGCCTGGAGGGTGCCTTTTCTGGCCAAACTTTTGTGAGACAGAGGACGTGTGAAGGCAGACGGACGCTACGAGCACAAAAGAATGTCATGAAATGCCCTTCTTGCCCCAATGACATCTCTGACTTCCTTCAAAATCCACAGGTTAATAGAGAGTTGATGGATGTGATAGTATCACTCCAGCGCAGGACTGTGGAGTCGGGGGAAGATGCTGAGGAGACGAGTGAAGGAACCGATGGCATGGATGAAAAGCCTGATGCCATTACTGGTGATAAAGAAATTGGCGAGAGTTGTGAAATTCAGGAGGATTCTGAAGAGACTGATGGCATGAACGAGAAGCAGGATTCTGAAGAGACTGATGGCATGGATGAGAAGCCTGATGCTGTTGCTGCAGATAAGGAAACTGGTGATGAAAGTTGTGAAATTCAGGATGCTTACCAAAAGGATGTATCTGATCCTTTGGTTGAAACCAAACCCGAGAAGGGTAACAAGCAAAAGAAAGTATTACCCAGGAAGTCAGATAGTGTGAATGGTAATGCTGAAGTGAAGTCTGATACTTTGAATGCCGATGCTGAAGTTAATGCTGTCAAAGGGGGGGCTCCTGAAAATAATGAGCTACAAACAAGTCCAGTTGACAGCACACCAAAGCGAAATTACAAGAGAAGGAAGCCTAATGGAGTGAGCAACAGCCCCGCATCAACGCTGGGTTATGGGGTGAAGACTAGAAGCATGAAGGCCAAAATGGCAGCTGCTGCTCCAAATGATTTGCCATCAATTACAATCCAAGTTCAGAGTGATGATGATTTTGAATGA 2448 0.4931 MAHGSDLPCDGDGVCMICRRKPSDDESITCKTCATPWHVTCLSVRPETLADALQWQVADALQWECPDCSPAVGERDPPEVSETAVAAGGSEGSGDLIAAIRAIESDGSLTEQEKAKRRQELLSGTVRSGSPEEGSPNKRKNGGRDVLDILDGSLNCSVCMQLLERPVTTPCGHNFCLKCFEKWIGQGKRTCANCRNEIPRKVASQPRINSALVVAIRMAKMSKSVTSVGTSKVYHFVHNQNRPDKAYTTERAKKAGKANACSGKIFVTVPPDHFGPILAENDPERNQGVLVGESWEDRLECRQWGAHLPHVAGIAGQSEVGAQSVALSGGYEDDEDHGEWFLYTGSGGRDLSGNKRTNKEQSFDQKFEKSNEALKVSCLKGYPVRVVRSHKEKRSSYAPETGVRYDGIYRIEKCWRKVGIQGFRVCRYLFVRCDNDPAPWTSDDHGDRPRPLPVIKELKNATDTSERKGTPSWDYDETEGRWMWKKPPPASRKQGDGGGTVVRKIQRHKQILSAKERLLNEFRCLMCRNVMVLPLTTPCAHNFCKSCLEGAFSGQTFVRQRTCEGRRTLRAQKNVMKCPSCPNDISDFLQNPQVNRELMDVIVSLQRRTVESGEDAEETSEGTDGMDEKPDAITGDKEIGESCEIQEDSEETDGMNEKQDSEETDGMDEKPDAVAADKETGDESCEIQDAYQKDVSDPLVETKPEKGNKQKKVLPRKSDSVNGNAEVKSDTLNADAEVNAVKGGAPENNELQTSPVDSTPKRNYKRRKPNGVSNSPASTLGYGVKTRSMKAKMAAAAPNDLPSITIQVQSDDDFE* 816
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1581 815 Gene3D - 255 453 IPR036987 -
Vvi1g1581 815 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 104 223 IPR013083 -
Vvi1g1581 815 SUPERFAMILY FYVE/PHD zinc finger 4 73 IPR011011 -
Vvi1g1581 815 ProSiteProfiles Zinc finger RING-type profile. 156 195 IPR001841 -
Vvi1g1581 815 SMART ring_2 524 581 IPR001841 -
Vvi1g1581 815 SMART ring_2 156 194 IPR001841 -
Vvi1g1581 815 SMART ring_2 15 68 IPR001841 -
Vvi1g1581 815 Pfam Zinc finger, C3HC4 type (RING finger) 155 194 - -
Vvi1g1581 815 FunFam E3 ubiquitin-protein ligase ORTHRUS 2 510 628 - -
Vvi1g1581 815 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 5 653 IPR045134 -
Vvi1g1581 815 MobiDBLite consensus disorder prediction 70 89 - -
Vvi1g1581 815 SUPERFAMILY PUA domain-like 258 453 IPR015947 -
Vvi1g1581 815 SUPERFAMILY RING/U-box 516 605 - -
Vvi1g1581 815 FunFam E3 ubiquitin-protein ligase ORTHRUS 2 255 450 - -
Vvi1g1581 815 CDD RING-HC_ORTHRUS_rpt1 153 199 IPR047498 -
Vvi1g1581 815 ProSitePatterns Zinc finger RING-type signature. 539 548 IPR017907 -
Vvi1g1581 815 MobiDBLite consensus disorder prediction 643 658 - -
Vvi1g1581 815 MobiDBLite consensus disorder prediction 108 144 - -
Vvi1g1581 815 ProSiteProfiles Zinc finger RING-type profile. 524 581 IPR001841 -
Vvi1g1581 815 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 510 630 IPR013083 -
Vvi1g1581 815 ProSitePatterns Zinc finger PHD-type signature. 15 68 IPR019786 -
Vvi1g1581 815 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 88 IPR013083 -
Vvi1g1581 815 MobiDBLite consensus disorder prediction 609 781 - -
Vvi1g1581 815 Pfam SAD/SRA domain 287 435 IPR003105 -
Vvi1g1581 815 Pfam RING-type zinc-finger 524 579 IPR027370 -
Vvi1g1581 815 SMART PHD_3 14 69 IPR001965 -
Vvi1g1581 815 MobiDBLite consensus disorder prediction 623 642 - -
Vvi1g1581 815 FunFam E3 ubiquitin-protein ligase ORTHRUS 2 102 223 - -
Vvi1g1581 815 SUPERFAMILY RING/U-box 148 201 - -
Vvi1g1581 815 ProSiteProfiles YDG domain profile. 284 432 IPR003105 -
Vvi1g1581 815 SMART G9a_1 279 436 IPR003105 -
Vvi1g1581 815 ProSiteProfiles Zinc finger PHD-type profile. 12 71 IPR019787 -
Vvi1g1581 815 MobiDBLite consensus disorder prediction 793 815 - -
Vvi1g1581 815 MobiDBLite consensus disorder prediction 659 716 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1581 Vvi-Chr1 22586463 22593857 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1581 1 612 C2H2 Transcription Factor Family AT5G39550 61.238 0.0 755