Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1579 ATGTCGGCCATGGTTTCGGCTCTTTCTCAAGTGATAGGCACCAGGGACAACAACCCTAGTGCTACTCGTATGGTGCAGTCGGCTGATTCATCTTCAGCTCTCTCTGAATCATCTCAATTACCACCCCAAGATCAAGGAAATGTGAGGAGAAGGCACTATAGAGGAGTAAGGCAAAGGCCATGGGGGAAATGGGCCGCCGAAATACGAGACCCGAAGAAGGCGGCGAGAGTCTGGCTAGGCACATTCGACACGGCCGAGGATGCGGCCCTCGCCTATGATCAAGCAGCCCTCAGGTTCAAAGGCACCAAGGCTAAGCTCAACTTTCCCGAGCGCGTCCAACAACAAACAAGTCAGATTGGGTATTTCATGGACCACGCAGGCATGTTCGACGACCAAAGCCATCGTCCTCCGGCCATGCCGGCGCCTCCTCCGCCTCTTCCTCCTCCGTCGCTGCCACACGAATTTCTTCAGTATGGTCAGCTCCTCTCTAGTAGCAGTGACGCCGATTTCGCTTATTTCAGTTCGAATCTTTACAACCAACCCCAACAGCAACCGCCTTATTTCCCGCAACCGTCGTCCACCACCACCACCACCACTTCTTCGTCTTCTACTACCACCTCGGATCAGTACTACTCTTCACAGAGCTCGTCCAGCTTCTATTATCCTCACTATGGGGAAGACTTCAATACTAGTTACCACCCACCAAGTGAGTAG 714 0.5308 MSAMVSALSQVIGTRDNNPSATRMVQSADSSSALSESSQLPPQDQGNVRRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEDAALAYDQAALRFKGTKAKLNFPERVQQQTSQIGYFMDHAGMFDDQSHRPPAMPAPPPPLPPPSLPHEFLQYGQLLSSSSDADFAYFSSNLYNQPQQQPPYFPQPSSTTTTTTSSSSTTTSDQYYSSQSSSSFYYPHYGEDFNTSYHPPSE* 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1579 237 FunFam Ethylene-responsive transcription factor 2 51 110 - -
Vvi1g1579 237 Gene3D AP2/ERF domain 51 111 IPR036955 GO:0003700|GO:0006355
Vvi1g1579 237 PANTHER DNA-BINDING DOMAIN 31 206 IPR044808 GO:0003700|GO:0009873
Vvi1g1579 237 MobiDBLite consensus disorder prediction 14 45 - -
Vvi1g1579 237 ProSiteProfiles AP2/ERF domain profile. 52 109 IPR001471 GO:0003700|GO:0006355
Vvi1g1579 237 CDD AP2 52 110 IPR001471 GO:0003700|GO:0006355
Vvi1g1579 237 SMART rav1_2 52 115 IPR001471 GO:0003700|GO:0006355
Vvi1g1579 237 SUPERFAMILY DNA-binding domain 52 110 IPR016177 GO:0003677
Vvi1g1579 237 MobiDBLite consensus disorder prediction 14 54 - -
Vvi1g1579 237 MobiDBLite consensus disorder prediction 136 152 - -
Vvi1g1579 237 PRINTS Ethylene responsive element binding protein signature 75 91 IPR001471 GO:0003700|GO:0006355
Vvi1g1579 237 PRINTS Ethylene responsive element binding protein signature 53 64 IPR001471 GO:0003700|GO:0006355
Vvi1g1579 237 MobiDBLite consensus disorder prediction 181 215 - -
Vvi1g1579 237 Pfam AP2 domain 52 101 IPR001471 GO:0003700|GO:0006355
Vvi1g1579 237 MobiDBLite consensus disorder prediction 127 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1579 Vvi-Chr1 22568108 22570236 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1579 4 178 AP2-EREBP Transcription Factor Family AT5G13330 53.672 7.77e-50 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vvi1g1579 AP2 3.3e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1579 - - vvi:100250476 346.665