Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1576 ATGCCATCAAAAATGACAGACTTACATGGTTGGTCTCGGTCCTCATACTTTTCTGAGGAAGCATGCTTGCCTAGTGAGAGACAAGTTGGGTTTTGGAAGGCAGAAACCATGGCTGACCGCAATGGTGGCAAATCAATTGCTTCTTCACCCATGGAGAAACTTATACCAACAGAATCTCAGACGGTGAATTGCTGGGAGCAATCAGAGCCCTACCTAATCCGGGACCAGAAAGTGAATCTTAGCTCCGAAAGGCATGCAGTGGGAGCAGAGAGAGTAGTCAGAAATTCCTTGGATATGTGGAGAACTGTGGAACATGATCTAGGGACAAGATCTAATGCAAATGTACATTCAGCATCCTATTTTATGGAAGGTGACAAAATTAATATGACTGGTTCTCAGTATGAGAATGGTCTGTTCTCAAGCTCACTGTCAGAATTATTTAATAGAAAGTTGAGATTATCATCAAACAATGGACTATATGGCCATTCTGTTGATACTGTTGCCCCTCATCATGAGGAAGAGGACCTTTTTGAATCTCTTGAGGAAATTGAGGCCCAAACCATTGGAAACCTCCTCCCTAATGAGGATGACTTGCTTTCCGGAGTGGCTGATGTGCTTGACTATGTTGTCCAACCCAGTAATGGAGATGATTTAGAAGATATAGACCTTTTTAGCAGTGTTGGAGGGATGGATTTAGGGGATGATGGGTCCTCTGCAGGACAAAGAAATTCTGAATATCCTGGAGGAATGTCTAATGGTCAGCTAGGAGGATCTAATGGTTCAGCAGTTGGGGAACACCCTTATGGTGAACATCCTTCTAGGACACTGTTTGTGAGAAATATAAATAGCAATGTTGAAGATTCTGAGTTACGGATCCTTTTTGAGCAATATGGAGATATTCGTGCCCTTTATACGGCCTGCAAGCATCGTGGTTTTGTTATGATCTCATATTATGATATAAGAGCAGCCCGAAATGCAATGAGAGCACTCCAGAACAAACCATTGAGGCGTAGGAAGCTTGACATTCATTATTCTATTCCAAAGGACAACCCTCCAGAAAAGGATGTTAATCAGGGCACCCTTGTGGTCTTTAACCTAGATCCTTCTGTAACAAATGATGAACTACTTCAGATATTTGGTGTTTATGGAGAGATTAAAGAGATCCGTGAAACTCCACACAGAAGTCATCACAAATTTGTAGAGTTTTATGATATAAGAGCTGCAGAAGCTGCTCTTCGTGCTTTGAATAGAAGTGATATTGCTGGGAAACGGATTAAACTTGAACCAAGCCGTCCTGGTGGTGCAAGACGTTTGATGCAACAATTTCCTTCTGAGCTGGAGGAAGATGAATCAGGTCTTTATCTGCAACAGAATAACACTCCTAACAATTCAACAACAGGATTCCCTGGACCAGCTTCACTTGGAGCAATTACCTCTAGCAGCATGGAGAATGGAACAATTATGGGAGTACACTCTGGAATCCCATTTCCTATTAGACCCTTCCTGGAAAATGTGTCTCATCATGGGATCTCTTCTAGTGTTCCGAACACCTTACCCTCTCTCTTGTCTGTCGAATCAGTTGGCAGTCAATCTGGTCTTGCTGAGTCCAGCCGCTCACAGGGCCAATTGAAATTTGATTTTCGAGGCACACAAAGTTTGCACCCTCATTCACTCCCAGAGTATAATGATGGTTTAGCTAATGGTGCTCCCTGCAATCCTGTGGGCACCATGGCTGCCAACATCAATCCCAGGCCAGAAAGAATTGAGAATAGGCAGTTGTCTGGAGCAAACTCGAATGGCCTCACAGTTGAACTTAATGATGGTGTTTTTGGTTCTTCTGGAAATGGAAGTTGTCCTCTTCCTGGACATCATTATATGTGGAGTAATTCGCATCACCCTCAGTCTCCAGGCATGATGTGGCCGAACTCACCATCCTTTATGAATGGGATTGGCACTGCTCATCCTCCACCTAGATTGCATGGACTTCCTAGGGCACCATCTCATATGCTGAATACTATGCTATCTATTAATAACCACCATGTGGGATCAGCACCAACTGTTAATCCTTCTATCTGGGACAGGCGGCATACCTATGCTGGGGAATCCTCTGAGGCTTCTGGGTTTCATCCAGGTTCTCTTGGGAGTATGAGAATTTCCAATAACTCACTGCATCCTTTGGAATTTGCTCCTCATAATATCTTCCCTTCTGTTGGTGGGAACTGCATAGATCTTTCCATTCCCCCTAAAAATGTTGGACTGCACTCCCATCATCAGAGGTGCCTGATGTTTCCTGGCAGAAGCCAACTGATTCCTATGATGAGTTCCTTTGACCCTCCTAATGAGCGTTCTAGAAGCCGTAGAAATGACAACAGTTCCAATCAGGTTGACAACAAGAAACAATATGAACTTGATATTGACCGCATACTGCGAGGGGAGGACACCCGGACAACACTCATGATAAAGAACATTCCCAACAAATATACTTCAAAGATGCTTTTGGCTGCAATTGATGAACGCCACCGGGGGACTTACGATTTCATTTACCTACCCATTGATTTCAAGAACAAATGCAATGTAGGGTATGCCTTTATCAACATGACCGATCCTTGCCAGATTATTCCATTCTATCAGGCATTCAATGGAAAGAAATGGGAGAAGTTCAATAGCGAAAAGGTGGCATCACTTGCATATGCCCGCATACAGGGAAAGGCTGCTCTCATTGCCCATTTCCAGAACTCAAGCCTGATGAATGAGGATAAGCGATGTCGTCCCATTCTCTTCCATACTGATGGTCCCAATGCAGGTGATCAGGTGCCTTTCCCAATGGGAGTAAATGTTCGATCTAGACCTGGAAAAACTCGAACCAGCTCCAATGAGGACAACCACCAAGGAAGTCCACCAAATTTGACAACTGGGGAGGACTATTCGAATGGAGACTCATCTTCAGGTTCAACAAAGGATTCAGACTGA 2970 0.4391 MPSKMTDLHGWSRSSYFSEEACLPSERQVGFWKAETMADRNGGKSIASSPMEKLIPTESQTVNCWEQSEPYLIRDQKVNLSSERHAVGAERVVRNSLDMWRTVEHDLGTRSNANVHSASYFMEGDKINMTGSQYENGLFSSSLSELFNRKLRLSSNNGLYGHSVDTVAPHHEEEDLFESLEEIEAQTIGNLLPNEDDLLSGVADVLDYVVQPSNGDDLEDIDLFSSVGGMDLGDDGSSAGQRNSEYPGGMSNGQLGGSNGSAVGEHPYGEHPSRTLFVRNINSNVEDSELRILFEQYGDIRALYTACKHRGFVMISYYDIRAARNAMRALQNKPLRRRKLDIHYSIPKDNPPEKDVNQGTLVVFNLDPSVTNDELLQIFGVYGEIKEIRETPHRSHHKFVEFYDIRAAEAALRALNRSDIAGKRIKLEPSRPGGARRLMQQFPSELEEDESGLYLQQNNTPNNSTTGFPGPASLGAITSSSMENGTIMGVHSGIPFPIRPFLENVSHHGISSSVPNTLPSLLSVESVGSQSGLAESSRSQGQLKFDFRGTQSLHPHSLPEYNDGLANGAPCNPVGTMAANINPRPERIENRQLSGANSNGLTVELNDGVFGSSGNGSCPLPGHHYMWSNSHHPQSPGMMWPNSPSFMNGIGTAHPPPRLHGLPRAPSHMLNTMLSINNHHVGSAPTVNPSIWDRRHTYAGESSEASGFHPGSLGSMRISNNSLHPLEFAPHNIFPSVGGNCIDLSIPPKNVGLHSHHQRCLMFPGRSQLIPMMSSFDPPNERSRSRRNDNSSNQVDNKKQYELDIDRILRGEDTRTTLMIKNIPNKYTSKMLLAAIDERHRGTYDFIYLPIDFKNKCNVGYAFINMTDPCQIIPFYQAFNGKKWEKFNSEKVASLAYARIQGKAALIAHFQNSSLMNEDKRCRPILFHTDGPNAGDQVPFPMGVNVRSRPGKTRTSSNEDNHQGSPPNLTTGEDYSNGDSSSGSTKDSD* 990
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1576 989 FunFam MEI2-like protein 5 isoform 2 263 357 - -
Vvi1g1576 989 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 276 340 IPR000504 GO:0003723
Vvi1g1576 989 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 361 426 IPR000504 GO:0003723
Vvi1g1576 989 Gene3D - 358 451 IPR012677 -
Vvi1g1576 989 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 359 432 IPR000504 GO:0003723
Vvi1g1576 989 MobiDBLite consensus disorder prediction 949 989 - -
Vvi1g1576 989 SUPERFAMILY RNA-binding domain, RBD 817 902 IPR035979 GO:0003676
Vvi1g1576 989 Pfam RNA recognition motif 2 815 911 IPR007201 -
Vvi1g1576 989 PANTHER RNA RECOGNITION MOTIF-CONTAINING 115 976 - -
Vvi1g1576 989 FunFam Protein MEI2-like 1 358 452 - -
Vvi1g1576 989 SUPERFAMILY RNA-binding domain, RBD 271 433 IPR035979 GO:0003676
Vvi1g1576 989 MobiDBLite consensus disorder prediction 772 797 - -
Vvi1g1576 989 SMART rrm1_1 817 893 IPR000504 GO:0003723
Vvi1g1576 989 SMART rrm1_1 360 428 IPR000504 GO:0003723
Vvi1g1576 989 SMART rrm1_1 275 343 IPR000504 GO:0003723
Vvi1g1576 989 MobiDBLite consensus disorder prediction 237 259 - -
Vvi1g1576 989 MobiDBLite consensus disorder prediction 780 797 - -
Vvi1g1576 989 CDD RRM1_MEI2_like 273 349 IPR034453 -
Vvi1g1576 989 Gene3D - 264 357 IPR012677 -
Vvi1g1576 989 MobiDBLite consensus disorder prediction 928 989 - -
Vvi1g1576 989 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 274 347 IPR000504 GO:0003723
Vvi1g1576 989 MobiDBLite consensus disorder prediction 234 262 - -
Vvi1g1576 989 CDD RRM3_MEI2_like 818 903 IPR034454 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1576 Vvi-Chr1 22511435 22524037 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1576 269 445 Eukaryotic Initiation Factors Gene Family AT3G16380 25.500 2.43e-10 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1576 - - vvi:100260954 1946.78