LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi1g1574	ATGTTTTTTGAACTTACAAGTTATAAATATTTTAATGGAGAAATTCTTTTTGGTGCAGGGGTTAGTGTTGGGCAGCAATTCTTTTCACGAGCTGAAATGGTTGTTGTAGGCTTGCATGGTCGCTGGATGAGTGGAATTGATTACATGGGCAAATCCTACAAGAAACAGGGGGAGTACAACAATTATACTTTTCCACTTGCTGTGGCAGTTGTTTTGTCTGGCAATTATGAAGATAATGAGGATGATATGGAAGAAGTCGTGTATTCTGGTGAAGGTGGGAATGACATCCTCGGTACTAAACAGCAAATTCGGGATCAAGTTATGGAGCGTGGTAACCTGGCACTTAAGAATAGCATGGAGCAGCTTGTCCCTGTTAGAGTCATCCGTGGCCATAAATTTCGTGATACTTATCCTCGCAAAGTTTACACATATGATGGCCTCTACATGATTAATGAATACTGGGAAGAAAAAGGTATTTCTGGATTTATTGTTTTTAAGTACAAATTAGACCGATTCGGAGGACAACCAAAGGCCAGCAGTAAGGTTGTTTTATTTTCTAATAAAAAGAGTTCATCAAGGGCTCCTTCTGCAAAGGATGAGTTGGTCTGCAAGGACATTGCTAAAGGTCAAGAAAAATTAAGAATTCCTGTTATCAATGAAGTTGACAATCATCGCGGGTTTACATATTCCAATTCTCTTAAAGTAGCTGACAACGTGATCCTCCCTCCGAATGCTGCTGGATGCAATTGCAAAGGGAAATGCACAAACCCAATGTCTTGTTCTTGTGCCGAGCGTAATGGATCTAGCTTTCCATATGTGCTTGAAAATGGCAACAGATTATTATTTGAACCAAAGGATGTTGTATTTGAATGTGGACCAAACTGTGGGTGTGGACCTAATTGCCTTAACCGCACATCTCAACAGGGAATAAAATATCATCTTGAGGTTTTTCGTACGAAGGAGAAAGGATGGGGAGTCAGAACCTTGGACTTTATTCCTTCAGGTTCACCAGTATGTGAATACATTGGAGAGCTTAAGAGGACCAAAGATATCAATGATGTTTTTGATAATGACTACATATTTGAAATTGATTGCTGGCAAACAATGCATGGAATTGGGGGAAGAGAGAAGCGACTAAAAGATGTACAAATACCTGTACATAACAATGTGGACAACATAGATGACATGCCTGAGTATTGCATAGATGCACGTAAAACTGGTAGTGTTTCCAGATTTGTCAATCACAGTTGTGAGCCTAACCTCTTTGTTCAGTGTGTTTTGAGTTCTCACCATGACCTCGAACTTGCCCAAGTGGTGCTATTTGCAGCTGAAAATATAACTCCTTCCCAGGAACTCACATATGACTACGGTTACATTCTTGATGGTGTTGTGGGTCCTGATGGTAATATAAAAGAGTTGGCATGCCGGTGTGGTGCAGCAAGCTGTAGTAAGCGTTTATACTAG	1464	0.403	MFFELTSYKYFNGEILFGAGVSVGQQFFSRAEMVVVGLHGRWMSGIDYMGKSYKKQGEYNNYTFPLAVAVVLSGNYEDNEDDMEEVVYSGEGGNDILGTKQQIRDQVMERGNLALKNSMEQLVPVRVIRGHKFRDTYPRKVYTYDGLYMINEYWEEKGISGFIVFKYKLDRFGGQPKASSKVVLFSNKKSSSRAPSAKDELVCKDIAKGQEKLRIPVINEVDNHRGFTYSNSLKVADNVILPPNAAGCNCKGKCTNPMSCSCAERNGSSFPYVLENGNRLLFEPKDVVFECGPNCGCGPNCLNRTSQQGIKYHLEVFRTKEKGWGVRTLDFIPSGSPVCEYIGELKRTKDINDVFDNDYIFEIDCWQTMHGIGGREKRLKDVQIPVHNNVDNIDDMPEYCIDARKTGSVSRFVNHSCEPNLFVQCVLSSHHDLELAQVVLFAAENITPSQELTYDYGYILDGVVGPDGNIKELACRCGAASCSKRLY*	488

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi1g1574	487	SUPERFAMILY	PUA domain-like	11	185	IPR015947	-
	Vvi1g1574	487	ProSiteProfiles	Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile.	20	487	IPR025794	GO:0016571
	Vvi1g1574	487	Pfam	Pre-SET motif	206	304	IPR007728	GO:0005634\|GO:0008270\|GO:0034968\|GO:0042054
	Vvi1g1574	487	ProSiteProfiles	Post-SET domain profile.	471	487	IPR003616	-
	Vvi1g1574	487	ProSiteProfiles	YDG domain profile.	16	171	IPR003105	-
	Vvi1g1574	487	SUPERFAMILY	SET domain	198	463	IPR046341	-
	Vvi1g1574	487	SMART	G9a_1	13	175	IPR003105	-
	Vvi1g1574	487	PANTHER	HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR	19	480	-	-
	Vvi1g1574	487	ProSiteProfiles	Pre-SET domain profile.	246	309	IPR007728	GO:0005634\|GO:0008270\|GO:0034968\|GO:0042054
	Vvi1g1574	487	Pfam	SAD/SRA domain	19	175	IPR003105	-
	Vvi1g1574	487	Gene3D	SET domain	195	487	IPR046341	-
	Vvi1g1574	487	ProSiteProfiles	SET domain profile.	312	457	IPR001214	GO:0005515
	Vvi1g1574	487	Gene3D	-	6	191	IPR036987	-
	Vvi1g1574	487	SMART	set_7	312	463	IPR001214	GO:0005515
	Vvi1g1574	487	Pfam	SET domain	323	457	IPR001214	GO:0005515
	Vvi1g1574	487	SMART	preset_2	203	296	IPR007728	GO:0005634\|GO:0008270\|GO:0034968\|GO:0042054

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi1g1574	Vvi-Chr1	22469075	22482650	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi1g1574	20	487	EF-hand Containing Proteins	AT5G13960	55.741	0.0	571

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	SET	Vvi1g1574		SAD_SRA	1.3e-46	CL0178

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi1g1574	K11420		-	vvi:100243837	948.347