Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1572 ATGGAGCTTGAGCGATTGAGCCTCGCTCCCGCCCCCGTTGACGACGACGCTGACGCCGTCCCTAACGGCGTCAACGCCGCCGGTGATGATGGCAGCCGAGCTCCACGGCTGCCGCGGTGGACGAGGCAGGAGATCCTCGTGTTGATTCAGGGCAAAAAGGTGGCCGAGAGCCGGGTCCGGAGGGGCCGGACCGGCGGGTTAGCGTTTGGGTCAGCGCAAATCGAGCCGAAGTGGGCGTCCGTTTCGTCGTATTGTAAGCGCCACGGCGTGAACCGGGGACCAGTCCAGTGCCGGAAACGATGGAGCAACCTCGCGGGCGATTACAAGAAGATCAAGGAATGGGAGTCGCAGATAAGGGACGAGAGCGAGTCGTTTTGGGTGATGAGGAACGACGTGAGGAGGGAAAAGAGGCTACCAGGGTTTTTCGATAGGGAGGTTTACGACATGCTCGACGGGGTTGGCGCCGCGCCGCCAGGGCCGTCCGGACTCGCTCTGGGCCTGGCGCCGGCCCCCGAGGGCGAGGGGATGGTGGCGCCAGAGGAGGAGGCGGAGGCCGTGTTCGATAGTGGGCGGAGCGCGGCGGCGGAGGACGGGCTGTTTTCGGACTTTGAGCAGTCAGGTGGGAGTCCGGAGAAGGAACCGCCGGCAAAGGAGGTTCCGGCGACGGTGGCAGCTCCTGTGCCAATTTCTGAGAAGCAGTATCAACCTTTTCCCAGGGAGGGTTCAAGTCAAGATACACAGGATTGA 747 0.6332 MELERLSLAPAPVDDDADAVPNGVNAAGDDGSRAPRLPRWTRQEILVLIQGKKVAESRVRRGRTGGLAFGSAQIEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAGDYKKIKEWESQIRDESESFWVMRNDVRREKRLPGFFDREVYDMLDGVGAAPPGPSGLALGLAPAPEGEGMVAPEEEAEAVFDSGRSAAAEDGLFSDFEQSGGSPEKEPPAKEVPATVAAPVPISEKQYQPFPREGSSQDTQD* 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1572 248 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASR3 2 246 - -
Vvi1g1572 248 ProSiteProfiles Myb-like domain profile. 39 105 IPR001005 -
Vvi1g1572 248 MobiDBLite consensus disorder prediction 1 36 - -
Vvi1g1572 248 Gene3D - 40 110 - -
Vvi1g1572 248 MobiDBLite consensus disorder prediction 182 248 - -
Vvi1g1572 248 Pfam Myb/SANT-like DNA-binding domain 39 128 IPR044822 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1572 Vvi-Chr1 22457479 22458836 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1572 29 188 Trihelix Transcription Factor Family AT1G76890 25.466 8.84e-08 50.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vvi1g1572 Myb_DNA-bind_4 4e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1572 - - vvi:100267783 468.774