Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1570 ATGCATTTCGCGAAGCTCGATGACTCTCCTATGTTTCGGAAGCAGATACAATGCTTGGAGGAAAGTGCTGAATCATTGAGGGAGAGAAGTCTGAAGTTTTACAAAGGATGTCGAAAATACACTGAAGGGCTTGGGGAAGGATATGATGGGGACATTGCTTTTGCAAGTGCTCTAGAAACTTTTGGTGGAGGACACAATGATCCTATTAGTGTGGCTTTTGGAGGCCCTGTTATGACCAAATTCACTATTGCATTGAGAGAGATTGGGACATACAAGGAAGTTCTTCGCTCCCAGGTTGAGCACATGCTAAATGACCGGTTGATACAATTTGTGAATATTGATTTGCATGATGTCAAGGAAGCAAGAAAGCGTTTTGACAAAGCTAGCCTCCTATATGATCAGGCTCGTGAGAAGTATCTGTCGCTGAGGAAAGGCACAAAAAGTGATATAGCTACTGTTCTGGAGGAGGAGCTTCATAATGCAAGATCTACATTTGAGCAAGCTCGCTTTAATCTGGTAACTACTCTTTCTAATGTTGAAGCAAAAAAAAGGTTCGAATTCTTGGAAGCAGTTAGTGGGACAATGGATGCTCACCTTCGCTACTTCAAGCAGGGGTATGAGCTGTTGCATCAAATGGAACCTTATATCAATCAGGTTTTGACTTATGCACAACAATCAAGAGAAAGGTCCAAATATGAACAGGCAGCCCTTAATGAAAAGATGCAAGAGTTCAAAAGACAGATTGATCGAGAAAGCAGGTGGCCTTCAAATGGTTCTAATGGGTCTCCTAATGGAGACGGTATACAAGCCATTGGCAGAAGCTCACATAAAATGATAGAGGCTGTGATGCAATCTGCAGCCAAGGGAAAGGTTCAAACCATCCGACAAGGTTACCTCTCAAAACGCTCCTCAAACCTGAGAGGTGACTGGAAAAGAAGGTTTTTTGTTCTTGATAGCCGAGGAATGCTATATTACTATCGCAAACAGAACAGCAAACCATCTGGATCTGGCAGTCAGCATTCAGGTCAGAGGAATAGTTCTGAACTTGGTTCTGGACTGTTGAGTCGGTGGCTTTCTTCCCATTATCATGGTGGAGTACATGACGAGAAATCTGTTGCTCATCACACAGTGAACCTGTTGACATCAACAATAAAGGTTGATGCTGATCAGTCAGATCTCAGGTTTTGTTTCAGGATTATTTCTCCAACGAAGAACTATACTTTGCAGGCAGAGAGTGCACTGGACCAAATGGATTGGATTGAAAAGATAACAGGGGTTATTGCTTCATTACTGAGTTCTCAGGCTCCTGAGAGGTGTCTGCCTATTAGTCCAATGGGAAGCAGTCATCACCGCTCTGCAAGTGAGAGTAGTTCATATGAAAGTACTGATTTCGATCACACAGCAGTTGAAGAATACACATCCGAGAGGAGCTCAGCCACTGCACATCATGAGCGCCCATCAAAAGGTTTGCAACAGATACGGTCCTGCATAAAATCCGAGAAGCCAATTGATGTATTGCGAAGAGTATGTGGGAATGATAAATGTGCTGATTGTGGGGCACCTGAACCAGACTGGGCATCCTTAAATCTTGGTGTTCTTGTCTGCATTGAATGTTCTGGTGTTCATCGTAATCTTGGTGTACATATATCAAAGGTAAGATCGCTGACACTTGATGTTAAAGTGTGGGAGCCTTCTGTATTAACTCTGTTTCAGTCTCTGGGCAATACCTTCGCTAATTCAGTTTGGGAGGAACTATTGCAATCAAGAAATGCCTTTCAGCTTATACAAGTCAGATAA 1797 0.429 MHFAKLDDSPMFRKQIQCLEESAESLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIGTYKEVLRSQVEHMLNDRLIQFVNIDLHDVKEARKRFDKASLLYDQAREKYLSLRKGTKSDIATVLEEELHNARSTFEQARFNLVTTLSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQMEPYINQVLTYAQQSRERSKYEQAALNEKMQEFKRQIDRESRWPSNGSNGSPNGDGIQAIGRSSHKMIEAVMQSAAKGKVQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQNSKPSGSGSQHSGQRNSSELGSGLLSRWLSSHYHGGVHDEKSVAHHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIASLLSSQAPERCLPISPMGSSHHRSASESSSYESTDFDHTAVEEYTSERSSATAHHERPSKGLQQIRSCIKSEKPIDVLRRVCGNDKCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVLTLFQSLGNTFANSVWEELLQSRNAFQLIQVR* 599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1570 598 MobiDBLite consensus disorder prediction 447 463 - -
Vvi1g1570 598 Pfam Putative GTPase activating protein for Arf 503 588 IPR001164 GO:0005096
Vvi1g1570 598 PRINTS HIV Rev interacting protein signature 512 531 IPR001164 GO:0005096
Vvi1g1570 598 PRINTS HIV Rev interacting protein signature 554 575 IPR001164 GO:0005096
Vvi1g1570 598 PRINTS HIV Rev interacting protein signature 531 548 IPR001164 GO:0005096
Vvi1g1570 598 Gene3D Arfaptin homology (AH) domain/BAR domain 4 250 IPR027267 -
Vvi1g1570 598 Pfam BAR domain of APPL family 6 232 IPR004148 GO:0005515|GO:0005737
Vvi1g1570 598 Pfam PH domain 294 427 IPR001849 -
Vvi1g1570 598 MobiDBLite consensus disorder prediction 253 269 - -
Vvi1g1570 598 SMART PH_update 293 430 IPR001849 -
Vvi1g1570 598 SUPERFAMILY ArfGap/RecO-like zinc finger 500 589 IPR037278 -
Vvi1g1570 598 Gene3D Arf GTPase activating protein 491 595 IPR038508 -
Vvi1g1570 598 SUPERFAMILY PH domain-like 204 427 - -
Vvi1g1570 598 MobiDBLite consensus disorder prediction 329 348 - -
Vvi1g1570 598 SMART 5bar 11 218 IPR004148 GO:0005515|GO:0005737
Vvi1g1570 598 MobiDBLite consensus disorder prediction 328 348 - -
Vvi1g1570 598 MobiDBLite consensus disorder prediction 441 464 - -
Vvi1g1570 598 Gene3D - 285 439 IPR011993 -
Vvi1g1570 598 ProSiteProfiles PH domain profile. 292 428 IPR001849 -
Vvi1g1570 598 CDD BAR_SFC_plant 14 215 IPR035670 -
Vvi1g1570 598 CDD ArfGap 503 586 - -
Vvi1g1570 598 SUPERFAMILY BAR/IMD domain-like 6 315 IPR027267 -
Vvi1g1570 598 Coils Coil 227 247 - -
Vvi1g1570 598 SMART arf_gap_3 500 598 IPR001164 GO:0005096
Vvi1g1570 598 MobiDBLite consensus disorder prediction 248 269 - -
Vvi1g1570 598 ProSiteProfiles ARF GTPase-activating proteins domain profile. 500 583 IPR001164 GO:0005096
Vvi1g1570 598 CDD PH_ACAP 295 432 - -
Vvi1g1570 598 PANTHER CENTAURIN/ARF 3 590 IPR045258 GO:0005096
Vvi1g1570 598 FunFam ADP-ribosylation factor GTPase-activating protein AGD1 482 597 - -
Vvi1g1570 598 Coils Coil 118 138 - -
Vvi1g1570 598 FunFam ADP-ribosylation factor GTPase-activating protein AGD3 4 251 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1570 Vvi-Chr1 22422944 22442015 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1570 485 586 C2H2 Transcription Factor Family AT4G21160 44.660 1.87e-19 88.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1570 K12489 - vvi:100259206 1144.41