Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1569 ATGGAGAAGACGAGCAGAGAAGCCATTTCCCTGCTTTTCCTGCTCATCTTCATCCATTTCTACAACGTAAAATGCCAAGAAAACATTATCAACCGCGTCTCCACTGATTCTTCTCCATCTCCATCTAGAGAAGCAGAATTCAAAAGTGGTCTCAAGAAGATAATCCTCAGCATAGTATTCGGGGTTTTAACCGGTTTGCTCTCCGCCGCCTTGTGCGCCGGCATAGTCCACTGCGTCGTCCGCTACATGAACCGAACCCCAATTCTCAAAGGCCCAGTTGTATTCTCCCCCAAAATCGCCCCCAAAACGGTCCAATCCGCGCTTGACAGTGAGAATCAGCTTCTAGGATCAAGCCCCAATGGAAAATACTACAAAACCGCTCTCGATAATGGACTCATAATCGCAGTCAAGAGGCTTGAACCCTTTGAGACTGGCTCACCAGAAACCCAAAGTAAATCCGTGAAGAGAAGAATTCAGCAGGAACTAGAAATGCTAGCCAACTTGAGACATAGAAATTTGATGAGTTTGCGGGCTTATGTCCGCGATTCCGATAGGTTTTCACTGGTCTATGACTATGTCCCCACTGGGAGTCTTGAGGACGCCATGAATAGAGTTAGGGAGAATCAGCTGCAGCTTAGTTGGGAGGTTCGGCTTAGGATTGCAGTTGGGGTGATCAAGGGTCTTCAGTATCTTCATTTCAGCTGCGTTCCTAGAATTTTACACTATAATCTGAAGCCAACCAATGTAATGTTGGATGCAGAGTTTGAGCCTAGATTGGCAGATTGCGGGCTGGCTAAGCTCATGCCTAATTTGGATAGAGCTGCGTCGGGGTATAGCGCTCCAGAGTGTTTCCAGAATTGCAGGTATACTGAGAAGAGCGACGTGTTCAGCTTTGGGGTCATACTGGGGGTTCTGCTAACTGGTAGAGACCCCATGGATCCATTCTTTAGTGAAGCAGCAGGTGGGGGGAGTTTGGGACGGTGGCTTCGCCATTTGCAGCAAGCAGGAGAGGCAAGAGAGGCATTGGATAAGAGCATCCTTGGGGAAGAAGTAGAGGAAGATGAGATGCTGATGGCAGTGAGAATTGCTGTTGTTTGCCTATCCGATTTGCCTGCAGATCGGCCTTCCAGCGATGAGCTCGTCCCAATGCTCACCCAACTGCACAGCTTTTGA 1173 0.4851 MEKTSREAISLLFLLIFIHFYNVKCQENIINRVSTDSSPSPSREAEFKSGLKKIILSIVFGVLTGLLSAALCAGIVHCVVRYMNRTPILKGPVVFSPKIAPKTVQSALDSENQLLGSSPNGKYYKTALDNGLIIAVKRLEPFETGSPETQSKSVKRRIQQELEMLANLRHRNLMSLRAYVRDSDRFSLVYDYVPTGSLEDAMNRVRENQLQLSWEVRLRIAVGVIKGLQYLHFSCVPRILHYNLKPTNVMLDAEFEPRLADCGLAKLMPNLDRAASGYSAPECFQNCRYTEKSDVFSFGVILGVLLTGRDPMDPFFSEAAGGGSLGRWLRHLQQAGEAREALDKSILGEEVEEDEMLMAVRIAVVCLSDLPADRPSSDELVPMLTQLHSF* 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1569 390 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 38 385 - -
Vvi1g1569 390 Gene3D Phosphorylase Kinase; domain 1 98 192 - -
Vvi1g1569 390 ProSiteProfiles Protein kinase domain profile. 109 390 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g1569 390 SUPERFAMILY Protein kinase-like (PK-like) 113 384 IPR011009 -
Vvi1g1569 390 FunFam Inactive leucine-rich repeat receptor-like protein kinase CORYNE 193 389 - -
Vvi1g1569 390 CDD STKc_IRAK 115 387 - -
Vvi1g1569 390 FunFam Inactive leucine-rich repeat receptor-like protein kinase CORYNE 101 192 - -
Vvi1g1569 390 Pfam Protein kinase domain 112 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g1569 390 Gene3D Transferase(Phosphotransferase) domain 1 193 389 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1569 Vvi-Chr1 22415119 22416757 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1569 55 387 Receptor kinase-like Gene Family AT2G31880 34.181 7.47e-61 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-2 Vvi1g1569 Pkinase 7.1e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1569 - - vvi:104880871 761.14