Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1566 ATGACCATGATTCCTGCGCGTAATCTCTCCAAACAGTGTTTTCGCGGCGGTTATGGTGATTATACTGGTAATTACTTGGACGAGAACGTATGTCTTATGAGCAGATTAGAAGGGTATGACTGTTGTAGTGAAGCTTGCTTAGGATCTGATCTAGTGCTTGCTCCCATGGCGGAAAATGAATCAAGAGCTGATAGTGTCAATGAGACAGGCTCCAGCTCGAAAGATATGCAGGAAGATAGAGACGAAGAGTGGCTCCAATTGAGTATTGGCGGCCAAATGACGAGCCAAGAGCGCAAGCAGCACCACCATCATCATCAGCTCGATCCCATGTCCGGCCGAGGTGGGATGGTTGAGCTGAATCTGTTACCAGGCCGCAGCGGCTCGCAGCAAGGGAGGCCATTAGGCCCCATCATCCACCACCTGCCTGACTTCCGGCCGCCGCCACCGCGGCCAATTACCAATATCACTAACAGTTTTAGCACATCCTTATTCTTGCAACAACAACAGCCTGGAGCTGCCTCAAATTTTCCTCATCTCCAAGATATTAACTGGGCATTCCGGCATATCCCGCAAAATATAACATCGGCTTCTTCATCCACCTCTTCATCTTTCATACCCCAAGCCCCCTATTTCGCTACACCCTTCCAACTCCACGCCCCCGGAGTAGATGTAGCTGGGCCGAGCTCGGATTTCAGAATCATCAATGCCAATGCCTCCCACAGGCCTCATTCGGGTGTTTGGTTTCTTCTACAAGCATCGCAAAACCAGGCCAAAGAACCCTTTTTGCCTCAGATACCCAAGAGCTACTTAAGAATCAAAGACGGGAGGATGACAGTTCGATTATTAATGAAGTATGTGGTTAATAAGCTGAGACTCGATAGCGAATCAGAGATAGAGATAACATGTAGAGGGCAACAACTTCTACCTTTCTTCACATTGCAGCATGTAAGAGATAACATATGGAGTCCAAGAGATGCACTCACTTTTCTTCAACCAGACTCATCCACTTCAGACCATGTCATGGTTTTAAACTATGGTAGGAGTGCTTGA 1050 0.4781 MTMIPARNLSKQCFRGGYGDYTGNYLDENVCLMSRLEGYDCCSEACLGSDLVLAPMAENESRADSVNETGSSSKDMQEDRDEEWLQLSIGGQMTSQERKQHHHHHQLDPMSGRGGMVELNLLPGRSGSQQGRPLGPIIHHLPDFRPPPPRPITNITNSFSTSLFLQQQQPGAASNFPHLQDINWAFRHIPQNITSASSSTSSSFIPQAPYFATPFQLHAPGVDVAGPSSDFRIINANASHRPHSGVWFLLQASQNQAKEPFLPQIPKSYLRIKDGRMTVRLLMKYVVNKLRLDSESEIEITCRGQQLLPFFTLQHVRDNIWSPRDALTFLQPDSSTSDHVMVLNYGRSA* 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1566 349 PANTHER RING FINGER PROTEIN 1 348 IPR044171 GO:0007275
Vvi1g1566 349 MobiDBLite consensus disorder prediction 59 130 - -
Vvi1g1566 349 Gene3D - 233 331 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1566 Vvi-Chr1 22356991 22364888 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1566 259 318 C3H Transcription Factor Family AT3G23060 40.000 6.37e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1566 - - vvi:104880861 689.493