Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1563 ATGTCGAGAGCCGCCATGGAACTTGATTTCTTCGGAATGGAGAAGGACGGCGCCACCGCCAAATCTCAGTTCCAGAGGTTCTCGGATCGCCGGAGAAGCTTTCGAGGAATGCAAAGCGCCATTTCCAAGATCAATCCGGATCTTCTCAAGACCGTGATCGCCTCCGGCTCTGTATCGCAGGCTCCGAAGAATAATCCGCCGTTCGCTTCCCGGAAGTCGTTCTCGGTGCCGTCCACTCCGAAAGCTGACCAGAATTACCTTCCGGCGTTGCCGGTTTACAGTCCTGTTTTCAGGCCTGTGAGTGCCGAAACAACTCCAATAACCATTTTCTATAATGGCACCGTCTCCGTTTTTGATGTCTCTCCAGAGCAGATCGAGAGTATCATGAAGCTCGCTTTGGACGGAAGCACCAAGACTGTGGAACCTGCTGATTCGAAACTTGCAATTCCTCCAAACGAGGAGCAGCAGCTTCTCGAGACTCTCAACGGAGATCTGCCACTGGCACGAAGGAAGTCATTGCACAGGTTTCTAGAGAAGCGTAAAGAGAGGTTGACTTCAGTGTACCCATATCCACCTCACATCCAATACGCGGTTTCAGACCAGGAAAAGACCACCATGGAGGAGCTGTTCCGGGCCTAG 639 0.5227 MSRAAMELDFFGMEKDGATAKSQFQRFSDRRRSFRGMQSAISKINPDLLKTVIASGSVSQAPKNNPPFASRKSFSVPSTPKADQNYLPALPVYSPVFRPVSAETTPITIFYNGTVSVFDVSPEQIESIMKLALDGSTKTVEPADSKLAIPPNEEQQLLETLNGDLPLARRKSLHRFLEKRKERLTSVYPYPPHIQYAVSDQEKTTMEELFRA* 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1563 212 ProSiteProfiles Tify domain profile. 100 134 IPR010399 -
Vvi1g1563 212 SMART tify_2 100 134 IPR010399 -
Vvi1g1563 212 MobiDBLite consensus disorder prediction 59 80 - -
Vvi1g1563 212 Pfam tify domain 102 132 IPR010399 -
Vvi1g1563 212 Pfam Jas motif 166 190 IPR018467 -
Vvi1g1563 212 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 29 197 IPR040390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1563 Vvi-Chr1 22328196 22330760 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1563 1 183 Tify Gene Family AT5G13220 39.301 1.82e-40 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Vvi1g1563 tify 6.1e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1563 K13464 - vvi:100262641 410.994