Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1552 ATGAAATTACCGGAATGCCCTCGTCTTCAACAATGGGAGCAGCTTCTCTGTTCTCTAACGGAGGAGACTCCTTACGTGGAAGCCTTCAAGGGAAAATGGGCTGTGATCGGAGTCAAACTCGCTCGTCTCCCGACTCAACTCACCCAGCTCGCTGAGTCACCGAACTCAGAGAGTCAGCTCGCATCGGAGCTGGTTGAAGCCGTTTCTCAGACCTTGTCCGACGCACTCTCCCTTGCCCGGAAGTGCCGGAATCCTAATCTAGTAGACGGGAAACTCAGAACCCAGAGCGATATCGATGCTGTAACGGCGAAGCTGCATCAGCACATAAGCGATCTCGACCTCCTGGCTCGCACCGGAGCTCTCGAGGAGAGCTCCGGCTCGGTGAGTTCGAGGAGGGAGTGGGTCCGAGTTGAAGCGAGGAACTTGATGACCCGGTTGCAAATCGGGAGTGCGGAGTCGAGGAACTCGGCGATGGAGTCATTGTTGAGGTTGTTGAATGAGGACGACAAGAACGTGTTGATCGTTGTGGCCCAGGGCGTGGTTCCGATTCTGACTCGGTTGCTCGACTCGGCGTGCCCGGAGATGAAGGCGAAAGCAGTGTCGGCGATTTCTAGGGTTTCGGTTGTGGATAGTTGCAAGCATGTGTTGATTGCAGAAGGGCTTCAGCTGATAAACCAATTGATTAGGGTTTTAGAATCAAGAAGTGGGTTTGCTAAGGAAAAAGCTTGTATTGCTCTGCAAGCTCTCAGCTTTTCCAAAGAGAACGCCAGAGCAATCGGGTGTAGAGGTGGGATTGGAGCTCTCTTGGAGATTTGTGAGGCCGGAACCCCTTGTTCTCAGGCGTATGCGGCCGGGGTTTTAAGAAATCTTGCTGGGTTCAATGAAATTCACCCAAATTTCATTGAGGAGAATGCTGTTCCTGTGCTTATAGGGCTTGCAGGTTCAGGGACCTTTGTGGCACAGGAGAATGCAATTGGGTGTTTGTGTAACTTGGTTTCAGAGGACCAGAGCATGAGGCTTTTGGTTGCCAGAGAAGGTGGGGTTGAATGCTTGAAGACTTTCTGGGACTCAGCCCCATCGGTTTATAGTCTTGAAGTTGCTGTTGGGTTGCTGAAGAACTTGGCCTCATGTAGGACAGTTGCAGAGGCCATTGTTTCTGAGGATTTCATTGGTAAACTCAAAGGGGTGTTAAGTTGTGGAGCTGTGGGTGTGAGAATTGCTGCTGCTGGGGCAGTTCATGAGCTGGGTTTCAGCTCAAGAACCCGGAAAGAGATGGGAGAAGCTGGATTTATACCACATTTGGTCATGATGTTGGAGGCCAAGGCTGTTGAGGAGAAGGAGATGGCTGCAAAGGCATTGTCGTCTCTCATGCTTTATTCTGGCAACAGAAGAATTTTCACCAAGCAAGAGAAAGGGATAGAGTGTGCAGTTCAGCTTCTTGATCCCCTGCAGAATTTGGATAAGAAATATGCGATTTCTGTTTTGGCTTCAATTGGGAATTCAAAAAAGTGTCGAAAACAAATCATAGCTGCAGGGGCTTGTGCTTACTTGCAGAAACTCATTGAAATGGAAATTGACGGGGCTAAGAAGCTTTATGAAAGCCTGGATGGGAATAGCAACATCTGGGGTCTATTTGGTAGAACAAAATGA 1650 0.4958 MKLPECPRLQQWEQLLCSLTEETPYVEAFKGKWAVIGVKLARLPTQLTQLAESPNSESQLASELVEAVSQTLSDALSLARKCRNPNLVDGKLRTQSDIDAVTAKLHQHISDLDLLARTGALEESSGSVSSRREWVRVEARNLMTRLQIGSAESRNSAMESLLRLLNEDDKNVLIVVAQGVVPILTRLLDSACPEMKAKAVSAISRVSVVDSCKHVLIAEGLQLINQLIRVLESRSGFAKEKACIALQALSFSKENARAIGCRGGIGALLEICEAGTPCSQAYAAGVLRNLAGFNEIHPNFIEENAVPVLIGLAGSGTFVAQENAIGCLCNLVSEDQSMRLLVAREGGVECLKTFWDSAPSVYSLEVAVGLLKNLASCRTVAEAIVSEDFIGKLKGVLSCGAVGVRIAAAGAVHELGFSSRTRKEMGEAGFIPHLVMMLEAKAVEEKEMAAKALSSLMLYSGNRRIFTKQEKGIECAVQLLDPLQNLDKKYAISVLASIGNSKKCRKQIIAAGACAYLQKLIEMEIDGAKKLYESLDGNSNIWGLFGRTK* 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1552 549 Gene3D - 358 526 IPR011989 -
Vvi1g1552 549 Gene3D - 130 357 IPR011989 -
Vvi1g1552 549 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 3 545 - -
Vvi1g1552 549 Pfam Armadillo/beta-catenin-like repeat 168 205 IPR000225 GO:0005515
Vvi1g1552 549 SUPERFAMILY ARM repeat 141 522 IPR016024 -
Vvi1g1552 549 SMART arm_5 168 208 IPR000225 GO:0005515
Vvi1g1552 549 SMART arm_5 418 458 IPR000225 GO:0005515
Vvi1g1552 549 SMART arm_5 293 333 IPR000225 GO:0005515
Vvi1g1552 549 SMART arm_5 335 376 IPR000225 GO:0005515
Vvi1g1552 549 SMART arm_5 252 292 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1552 Vvi-Chr1 22225548 22227197 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1552 117 351 U-box Gene Family AT2G23140 29.958 7.98e-15 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1552 - - vvi:100247251 1023.08