Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1551 ATGGTGAGCCCCAAACCCAGTAATGGCGAGAGGGTGCCCTGCGATTTCTGCAGTGGGCAGATTGCGGTTCTGTACTGCAGAGCTGACTCCGCGAAGCTCTGTTTGTTCTGCGACCAGCACGTTCACTCAGCGAACGCCCTCTCTCGCAAGCATCTGCGTTCTCAGATCTGCGATAACTGCAGTTCAGAGCCCGTTTCAGTCCGGTGCAGTACGGACAATATGGTGCTATGCCAAGAGTGCGATTGGGACGCCCACGGGAGCTGCTCTGTGTCCGCCGCACACGATCGGAAGCCGGTGGAGGGTTTCTCTGGCTGCCCCTCGGCGGTGCAGCTCTCCTCCATCTGGGGTCTCGATATCGAGGAGAAGAAGGCCCCGCTGCCGCCGCCGCCGTCCATGGCGGTGGATTCGTGGGTGTATAAGTCCAATACATTGACTTTTCAAGACTTAATGGTGCCGAACGGGAATGCGGTGGCCTTTCCGGATGCATTAGGTGGCGAGGTGTCGAAGAGGCAGAGCCCGAGCTGTGGGAAGCACAAACAAGTGATATTCAAACAGTTGGTGGAGTTGTTCAGGAGGGATTTACTGGCTGGCAATGGCGGTGGCGGTGGCATAGTCGGTGATGATGAAGATGATGGTGGCGGTGGCGTCTGCGGAGGTGGTGAAAATTTGGTGACGGGTTGGCAGGGGCATGTAGGGGAATCTATTGGTATAGAAAATGGTGGAGTATTGGATGTTGATCATCAGGCATTGGAGCAGCAAACACCATTCACATCTTTGCTTATGTTACCAAATCGCGCCACCACCGGCGGAGTGATTTTGTGGGATAATAATCCCAGTGATCAAAGCACTCAGATATGGGATTTTCATTTAGGACACTCAAGGGGTTATGAAGAATGTGGTCTATTAGAAGCCGAATATGGTGTTAATGATGCAGGATTCGTAATCAAGAGTTACAGTGAGCTTATGAAAGAAACATCATTCACAAATACAAAGGTGGTGGGGGAAATGTATGATATAAATTACTCCATGACACATGAAGATATCACATCATTTAATAATAACTCAAATAACCCAACAGCAAGCCAGGGAGCAGCAACTTCTGAGAGCAACAACTTACCTATTGCACGGCCGTCATCAGGTTCAGCTTTTGCTAAACCTAAAAGCTTTAGTGGATCGAAGGACATTGAGTTAACAGAACAATCTATTCTTATGAGAGGTGAAAGTGGAAGAACAGCAGCAACAACGAAGGTGGATTTGGAGCAGCTGGCACAGAATAGAGGTAATGCCATGCTACGTTACAAGGAAAAGAAGAAAACTAGAAGATATGATAAGCATATACGGTATGAGTCAAGGAAGGCAAGGGCTGATACTAGGAAGCGAGTGAAGGGTCGGTTTGTGAAGGCTACTGAAGCTCCGGATGGTTGA 1425 0.494 MVSPKPSNGERVPCDFCSGQIAVLYCRADSAKLCLFCDQHVHSANALSRKHLRSQICDNCSSEPVSVRCSTDNMVLCQECDWDAHGSCSVSAAHDRKPVEGFSGCPSAVQLSSIWGLDIEEKKAPLPPPPSMAVDSWVYKSNTLTFQDLMVPNGNAVAFPDALGGEVSKRQSPSCGKHKQVIFKQLVELFRRDLLAGNGGGGGIVGDDEDDGGGGVCGGGENLVTGWQGHVGESIGIENGGVLDVDHQALEQQTPFTSLLMLPNRATTGGVILWDNNPSDQSTQIWDFHLGHSRGYEECGLLEAEYGVNDAGFVIKSYSELMKETSFTNTKVVGEMYDINYSMTHEDITSFNNNSNNPTASQGAATSESNNLPIARPSSGSAFAKPKSFSGSKDIELTEQSILMRGESGRTAATTKVDLEQLAQNRGNAMLRYKEKKKTRRYDKHIRYESRKARADTRKRVKGRFVKATEAPDG* 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1551 474 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 13 471 - -
Vvi1g1551 474 MobiDBLite consensus disorder prediction 350 377 - -
Vvi1g1551 474 CDD Bbox1_BBX-like 13 56 - -
Vvi1g1551 474 ProSiteProfiles CCT domain profile. 426 468 IPR010402 GO:0005515
Vvi1g1551 474 MobiDBLite consensus disorder prediction 350 389 - -
Vvi1g1551 474 SMART bboxneu5 9 56 IPR000315 GO:0008270
Vvi1g1551 474 SMART bboxneu5 57 99 IPR000315 GO:0008270
Vvi1g1551 474 Pfam B-box zinc finger 55 98 IPR000315 GO:0008270
Vvi1g1551 474 ProSiteProfiles Zinc finger B-box type profile. 9 56 IPR000315 GO:0008270
Vvi1g1551 474 Pfam CCT motif 426 468 IPR010402 GO:0005515
Vvi1g1551 474 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1551 Vvi-Chr1 22216468 22220026 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1551 12 470 C2C2-CO-like Transcription Factor Family AT2G33500 45.319 6.05e-116 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Vvi1g1551 zf-B_box 2.6e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1551 - - vvi:100242118 926.391