LGRPv2

Gene search

Sequence information

Show entries

Search:

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi1g1551	ATGGTGAGCCCCAAACCCAGTAATGGCGAGAGGGTGCCCTGCGATTTCTGCAGTGGGCAGATTGCGGTTCTGTACTGCAGAGCTGACTCCGCGAAGCTCTGTTTGTTCTGCGACCAGCACGTTCACTCAGCGAACGCCCTCTCTCGCAAGCATCTGCGTTCTCAGATCTGCGATAACTGCAGTTCAGAGCCCGTTTCAGTCCGGTGCAGTACGGACAATATGGTGCTATGCCAAGAGTGCGATTGGGACGCCCACGGGAGCTGCTCTGTGTCCGCCGCACACGATCGGAAGCCGGTGGAGGGTTTCTCTGGCTGCCCCTCGGCGGTGCAGCTCTCCTCCATCTGGGGTCTCGATATCGAGGAGAAGAAGGCCCCGCTGCCGCCGCCGCCGTCCATGGCGGTGGATTCGTGGGTGTATAAGTCCAATACATTGACTTTTCAAGACTTAATGGTGCCGAACGGGAATGCGGTGGCCTTTCCGGATGCATTAGGTGGCGAGGTGTCGAAGAGGCAGAGCCCGAGCTGTGGGAAGCACAAACAAGTGATATTCAAACAGTTGGTGGAGTTGTTCAGGAGGGATTTACTGGCTGGCAATGGCGGTGGCGGTGGCATAGTCGGTGATGATGAAGATGATGGTGGCGGTGGCGTCTGCGGAGGTGGTGAAAATTTGGTGACGGGTTGGCAGGGGCATGTAGGGGAATCTATTGGTATAGAAAATGGTGGAGTATTGGATGTTGATCATCAGGCATTGGAGCAGCAAACACCATTCACATCTTTGCTTATGTTACCAAATCGCGCCACCACCGGCGGAGTGATTTTGTGGGATAATAATCCCAGTGATCAAAGCACTCAGATATGGGATTTTCATTTAGGACACTCAAGGGGTTATGAAGAATGTGGTCTATTAGAAGCCGAATATGGTGTTAATGATGCAGGATTCGTAATCAAGAGTTACAGTGAGCTTATGAAAGAAACATCATTCACAAATACAAAGGTGGTGGGGGAAATGTATGATATAAATTACTCCATGACACATGAAGATATCACATCATTTAATAATAACTCAAATAACCCAACAGCAAGCCAGGGAGCAGCAACTTCTGAGAGCAACAACTTACCTATTGCACGGCCGTCATCAGGTTCAGCTTTTGCTAAACCTAAAAGCTTTAGTGGATCGAAGGACATTGAGTTAACAGAACAATCTATTCTTATGAGAGGTGAAAGTGGAAGAACAGCAGCAACAACGAAGGTGGATTTGGAGCAGCTGGCACAGAATAGAGGTAATGCCATGCTACGTTACAAGGAAAAGAAGAAAACTAGAAGATATGATAAGCATATACGGTATGAGTCAAGGAAGGCAAGGGCTGATACTAGGAAGCGAGTGAAGGGTCGGTTTGTGAAGGCTACTGAAGCTCCGGATGGTTGA	1425	0.494	MVSPKPSNGERVPCDFCSGQIAVLYCRADSAKLCLFCDQHVHSANALSRKHLRSQICDNCSSEPVSVRCSTDNMVLCQECDWDAHGSCSVSAAHDRKPVEGFSGCPSAVQLSSIWGLDIEEKKAPLPPPPSMAVDSWVYKSNTLTFQDLMVPNGNAVAFPDALGGEVSKRQSPSCGKHKQVIFKQLVELFRRDLLAGNGGGGGIVGDDEDDGGGGVCGGGENLVTGWQGHVGESIGIENGGVLDVDHQALEQQTPFTSLLMLPNRATTGGVILWDNNPSDQSTQIWDFHLGHSRGYEECGLLEAEYGVNDAGFVIKSYSELMKETSFTNTKVVGEMYDINYSMTHEDITSFNNNSNNPTASQGAATSESNNLPIARPSSGSAFAKPKSFSGSKDIELTEQSILMRGESGRTAATTKVDLEQLAQNRGNAMLRYKEKKKTRRYDKHIRYESRKARADTRKRVKGRFVKATEAPDG*	475

Showing 1 to 1 of 1 entries

Previous1Next

Annotation information

Show entries

Search:

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Vvi1g1551	474	PANTHER	ZINC FINGER PROTEIN CONSTANS-LIKE 10	13	471	-	-
Vvi1g1551	474	MobiDBLite	consensus disorder prediction	350	377	-	-
Vvi1g1551	474	CDD	Bbox1_BBX-like	13	56	-	-
Vvi1g1551	474	ProSiteProfiles	CCT domain profile.	426	468	IPR010402	GO:0005515
Vvi1g1551	474	MobiDBLite	consensus disorder prediction	350	389	-	-
Vvi1g1551	474	SMART	bboxneu5	9	56	IPR000315	GO:0008270
Vvi1g1551	474	SMART	bboxneu5	57	99	IPR000315	GO:0008270
Vvi1g1551	474	Pfam	B-box zinc finger	55	98	IPR000315	GO:0008270
Vvi1g1551	474	ProSiteProfiles	Zinc finger B-box type profile.	9	56	IPR000315	GO:0008270
Vvi1g1551	474	Pfam	CCT motif	426	468	IPR010402	GO:0005515

Showing 1 to 10 of 11 entries

Previous1 2Next

Duplication type information

Show entries

Search:

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi1g1551	Vvi-Chr1	22216468	22220026	Dispersed/Wgd

Showing 1 to 1 of 1 entries

Previous1Next

Functional genes information

Show entries

Search:

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi1g1551	12	470	C2C2-CO-like Transcription Factor Family	AT2G33500	45.319	6.05e-116	345

Showing 1 to 1 of 1 entries

Previous1Next

Transcription factors information

Show entries

Search:

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	C2C2-CO-like	Vvi1g1551		zf-B_box	2.6e-05	No_clan

Showing 1 to 1 of 1 entries

Previous1Next

Pathway information

Show entries

Search:

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi1g1551	-		-	vvi:100242118	926.391

Showing 1 to 1 of 1 entries

Previous1Next