Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1543 ATGGAGAAGCTCAATTTTGTGAAGAATGGCGTCCTCAGATTGCCTCCTGGCTTCCGCTTCCATCCTACTGATGAAGAGCTGGTGGTGCAGTACTTGAAGCGCAAGGCCTATTCTTGCCCCCTGCCCGCCTCCATCATCCCTGAGGTCGATGTCTGCAAGGCTGATCCTTGGGATTTGCCAGGTGATTTGGAGCAGGAGAGGTACTTCTTCAGCACCAGGGAGGCCAAGTACCCGAATGGAAACCGGTCGAATAGAGCCACGGTTTCGGGTTACTGGAAGGCAACTGGAATTGACAAGCAAATTGTAGCTTCCAAGGGGAACCAGGTTGTGGGGATGAAGAAAACTTTGGTTTTTTATAGAGGAAAGCCTCCACATGGGTCGAGAACCGATTGGATCATGCACGAATACCGGCTTGTTGGTGCTGAAACCACCCCACAGAGAAAGAGCTCGACAACTCAGAGCTCAATGGCGCAAGCGGAGAACTGGGTGTTGTGCCGCATATTCCTGAAGAAACGGGGCACGAAAAATGATGAGGAGATGATGCAAACCAACAATGAGAACCGGGTGGTTCAGAAGTTGAGGAGCAGCAGGCCTGTTTTCTATGATTTCTTGACAAGGGGCAGGGATGATACTAATCTTGCTTCTTCCAATTCTTCGGGTTCAAGTGGGATCACAGAGGTGTCGAATACCGAATCAGAAGAACACGAAGAAAGCAGTAGTTGCAATAGTTTCTCGCCTTTCAGAAGAAAACCATAA 756 0.4947 MEKLNFVKNGVLRLPPGFRFHPTDEELVVQYLKRKAYSCPLPASIIPEVDVCKADPWDLPGDLEQERYFFSTREAKYPNGNRSNRATVSGYWKATGIDKQIVASKGNQVVGMKKTLVFYRGKPPHGSRTDWIMHEYRLVGAETTPQRKSSTTQSSMAQAENWVLCRIFLKKRGTKNDEEMMQTNNENRVVQKLRSSRPVFYDFLTRGRDDTNLASSNSSGSSGITEVSNTESEEHEESSSCNSFSPFRRKP* 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1543 251 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 225 - -
Vvi1g1543 251 Pfam No apical meristem (NAM) protein 15 138 IPR003441 GO:0003677|GO:0006355
Vvi1g1543 251 MobiDBLite consensus disorder prediction 211 251 - -
Vvi1g1543 251 MobiDBLite consensus disorder prediction 211 228 - -
Vvi1g1543 251 SUPERFAMILY NAC domain 10 170 IPR036093 GO:0003677|GO:0006355
Vvi1g1543 251 Gene3D NAC domain 23 175 IPR036093 GO:0003677|GO:0006355
Vvi1g1543 251 ProSiteProfiles NAC domain profile. 14 170 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1543 Vvi-Chr1 22097816 22098753 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1543 1 244 NAC Transcription Factor Family AT5G13180 61.977 1.02e-103 299
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vvi1g1543 NAM 5e-36 No_clan