Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1540 ATGCTCAGCCTTCTGCATCACCCTAACCTAGTGAATCTGATAGGCTACTGTGCTGATGGAGAACAGCGACTTCTTGTCTATGAATTTATGCCCCTGGGATCACTGGAGGATCACCTTCTTGATCTTCCACCTGATAAGGAACCGCTGGATTGGAACACAAGAATGAAGATAGCAGCTGGTGCAGCCAAGGGTTTGGAATACTTGCATGACAAAGCAAGCCCTCCAGTTATTTATAGAGACTTCAAGTCATCCAATATTTTACTAGAAGAAGGATTTCACCCCAAGCTTTCTGATTTTGGGCTTGCAAAGCTTGGTCCTGTTGGGGACAAGTCACATGTTTCAACTAGGGTTATGGGCACTTATGGTTATTGTGCTCCCGAGTATGCCATGACTGGACAATTGACAGTGAAGTCTGATGTCTACAGCTTCGGGGTGGTCTTCTTGGAGCTGATTACTGGACGTAAAGCCATTGACAGCACCCTACCCCATGGAGAACAGAATCTTGTCACATGGGCCCGCCCTTTGTTCAATGATCGTCGAAAATTTGCAAAGTTGGCGGACCCACGATTGCATGGTCGGTATCCAATGCGGGGTCTCTATCAGGCTCTAGCTGTGGCATCCATGTGCATCCAAGAACAAGCTGCCACCCGTCCTCTCATTGGTGATGTGGTGACTGCCCTCTCTTATTTGGCAAACCAGTCATATGACCCTAATGCAGCTCATGGGCACATCTACAGAGGTTCTGGGGATAGAGATGAGAGGAGAAACAGAGAGGAGAGAAGTGCAAGGGTTACAAGGAACGAGGATGGGGGAGGATCTGGACGAAGATGGGACTTGGAAGGGTCTGAGAGGGAAGACTCTCCTAGGGAAACTGCAAGGATGCTAAACAGGGATTTGGATAGAGAACGAGCTGTTGCTGAAGCCAAAATGTGGGGAGAGAATTGGCGAGAAAAGAGACGACAAAGTGCTCAAGGCAGTTTTGATGGCACTAACGGGTAA 999 0.4835 MLSLLHHPNLVNLIGYCADGEQRLLVYEFMPLGSLEDHLLDLPPDKEPLDWNTRMKIAAGAAKGLEYLHDKASPPVIYRDFKSSNILLEEGFHPKLSDFGLAKLGPVGDKSHVSTRVMGTYGYCAPEYAMTGQLTVKSDVYSFGVVFLELITGRKAIDSTLPHGEQNLVTWARPLFNDRRKFAKLADPRLHGRYPMRGLYQALAVASMCIQEQAATRPLIGDVVTALSYLANQSYDPNAAHGHIYRGSGDRDERRNREERSARVTRNEDGGGSGRRWDLEGSEREDSPRETARMLNRDLDRERAVAEAKMWGENWREKRRQSAQGSFDGTNG* 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1540 332 Gene3D Phosphorylase Kinase; domain 1 1 30 - -
Vvi1g1540 332 Gene3D Transferase(Phosphotransferase) domain 1 31 244 - -
Vvi1g1540 332 Pfam Protein tyrosine and serine/threonine kinase 2 157 IPR001245 GO:0004672|GO:0006468
Vvi1g1540 332 ProSitePatterns Serine/Threonine protein kinases active-site signature. 76 88 IPR008271 GO:0004672|GO:0006468
Vvi1g1540 332 SUPERFAMILY Protein kinase-like (PK-like) 2 227 IPR011009 -
Vvi1g1540 332 PANTHER OS07G0668900 PROTEIN 1 239 - -
Vvi1g1540 332 FunFam Serine/threonine-protein kinase PBS1 30 244 - -
Vvi1g1540 332 ProSiteProfiles Protein kinase domain profile. 1 230 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g1540 332 MobiDBLite consensus disorder prediction 245 323 - -
Vvi1g1540 332 MobiDBLite consensus disorder prediction 240 332 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1540 Vvi-Chr1 22069096 22071688 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1540 1 230 Glycoside Hydrolase AT3G07070 73.043 6.44e-124 360
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Vvi1g1540 PK_Tyr_Ser-Thr 4.9e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1540 K13430 - vvi:100254113 643.269