Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1535 ATGGATGAAACTAAGAGCAGACAGAAAAAAGGTCTGATGAAGAAGACATGGGAGCAATTCAAATCTTTTGGTCATGGGAGGATTTTATCAAGAACCCATCATTCTTCTATGAAAAGCAAGTCAAGGCCTGGCCACACAGCCTCTCTTGAAGGCGTGAAGAAGGGGCGGGTTGCTCCAGAGGGCTGCTTCTCAGTGTACGTTGGACATGGGAAACAAAGGTTTGTGGTCAAAACTGAGTATGCCAACCATCCTCTATTCAGAGCACTCCTAGAAGAGGCTGAGCTAGAATATGGGTACAACAATGGAGGGCCTCTTGTGCTTCCATGTAAAGTGGAAATTTTTCTTAAGGTGTTACTGGAAATGGACAGTTCTGATGAGGTTCATCAAGGGTGCAGCTTTGCTAGGAGCCCTAGCTCCTATCGCCTCCTCGGCCCATCTCGGATGATCACCATGAATCATCTATGA 465 0.4645 MDETKSRQKKGLMKKTWEQFKSFGHGRILSRTHHSSMKSKSRPGHTASLEGVKKGRVAPEGCFSVYVGHGKQRFVVKTEYANHPLFRALLEEAELEYGYNNGGPLVLPCKVEIFLKVLLEMDSSDEVHQGCSFARSPSSYRLLGPSRMITMNHL* 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1535 154 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 39 118 IPR003676 GO:0009733
Vvi1g1535 154 Pfam Auxin responsive protein 33 118 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1535 Vvi-Chr1 22022632 22023096 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1535 59 118 Calmodulin-binding Proteins AT4G34750 46.667 1.41e-15 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1535 K14488 - vvi:100245472 309.686