Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1532 ATGGGTCTGATCAAGAAGACATGGAACAGATGCAAATCCTTCAGCCACGGCAGGAGTTCAGAGAATATCCCCCGAGCTCCCAAGAAAAGCAAGTCATGGCCTCGCATCACCGCCGCCGCGGCCGCCGCCTCGCTTGAAGATGATAAGCGCGTAAAAAAAGGGCGGGTTGCGCCAGAAGGTTGCTTCTCAGTCTACGTAGGACCTGAGAAACAAAGGTTTGTGATAAAAACGGAGTACGCCAATCATCCTCTCTTCAAAATTCTCCTGGAAGAGGCCGAGCTAGAATATGGGTACAACAGCGAAGGCCCTCTTGCCCTCCCATGCAACGTCGAGATTTTTCACAAAGTGTTACTGGAAATGGACAGTTCTGATAAGATTCATCAGGGATGCACCTTCCCTAGGAGCCATAGCTCTTATCGCCTTCTCAGCCCATCTCCAATGATCGCCATGAATCACTTCTAA 462 0.5022 MGLIKKTWNRCKSFSHGRSSENIPRAPKKSKSWPRITAAAAAASLEDDKRVKKGRVAPEGCFSVYVGPEKQRFVIKTEYANHPLFKILLEEAELEYGYNSEGPLALPCNVEIFHKVLLEMDSSDKIHQGCTFPRSHSSYRLLSPSPMIAMNHF* 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1532 153 Pfam Auxin responsive protein 35 117 IPR003676 GO:0009733
Vvi1g1532 153 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 41 117 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1532 Vvi-Chr1 21966617 21967078 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1532 57 137 Calmodulin-binding Proteins AT5G20810 42.857 8.63e-19 77.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1532 K14488 - vvi:100854260 314.694