Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1526 ATGGCGGCTTCACTCACTACCCTGTCAAACGTCGGCTCGCTCTCGAGTCCACGGAGCGTCGCGCAGATCAAGGCTCTCGGCCCCACCTGTAACGCTCTGAAGCTTCCAAGATCTCCGTTCCCTTCGAATGTGTCGTCTTCGTCGTCGTCGAGCTTCGTCTCTGGCTCGTTTCGTCTGGTGCCTCTCACATCTTCGTTGAATCCTTGTTCTCGGAGAAGAACTGGTCTTCTTAGTTCGCTTAGAGCCTCTGCGCAGGAAGCACCATTACAATCAAAAGTAACACAAAAGGTATATTTTGATATAAGCATTGGAAACCCAGTTGGGAAGGTTGTTGGACGGATTGTGATTGGATTATTTGGTGACGATGTGCCTCAAACAGCAGAGAACTTCCGTGCGCTTTGCACAGGAGAAAAGGGCTTTGGATATAAAGGTTCTACATTCCATCGGGTCATCAAGGATTTCATGATTCAGGGTGGAGACTTTGACAAAGGAAATGGAACTGGAGGTAAAAGTATATATGGCCGCACATTTAAAGATGAGAACTTCAAGTTGGCTCATGTTGGACCTGGAGTTGTTAGTATGGCAAATGCTGGCCCTAACACCAATGGCAGCCAATTTTTCATATGCACTGTCAAGACCCCATGGCTGGACCAGAGGCATGTAGTTTTCGGGCAAGTTTTGGAAGGCATGGATATTGTTAAGCTGGTAGAGTCCCAAGAGACTGACAGAGGAGACCGCCCTAGAAAGAAGGTGGTTATCAGCGAATGTGGTGAACTGCCAATGGTCTGA 789 0.4816 MAASLTTLSNVGSLSSPRSVAQIKALGPTCNALKLPRSPFPSNVSSSSSSSFVSGSFRLVPLTSSLNPCSRRRTGLLSSLRASAQEAPLQSKVTQKVYFDISIGNPVGKVVGRIVIGLFGDDVPQTAENFRALCTGEKGFGYKGSTFHRVIKDFMIQGGDFDKGNGTGGKSIYGRTFKDENFKLAHVGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGMDIVKLVESQETDRGDRPRKKVVISECGELPMV* 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1526 262 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 111 257 IPR002130 GO:0000413|GO:0003755
Vvi1g1526 262 Gene3D - 82 261 IPR029000 -
Vvi1g1526 262 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 108 258 IPR002130 GO:0000413|GO:0003755
Vvi1g1526 262 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 142 159 IPR020892 GO:0003755|GO:0006457
Vvi1g1526 262 SUPERFAMILY Cyclophilin-like 89 259 IPR029000 -
Vvi1g1526 262 CDD cyclophilin_ABH_like 96 257 - -
Vvi1g1526 262 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 205 217 IPR002130 GO:0000413|GO:0003755
Vvi1g1526 262 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 190 205 IPR002130 GO:0000413|GO:0003755
Vvi1g1526 262 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 218 233 IPR002130 GO:0000413|GO:0003755
Vvi1g1526 262 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 118 133 IPR002130 GO:0000413|GO:0003755
Vvi1g1526 262 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 147 159 IPR002130 GO:0000413|GO:0003755
Vvi1g1526 262 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 96 259 - -
Vvi1g1526 262 FunFam Peptidyl-prolyl cis-trans isomerase 82 262 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1526 Vvi-Chr1 21897745 21913173 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1526 37 256 U-box Gene Family AT5G67530 38.739 5.13e-35 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1526 K03768 - vvi:100248997 479.944