Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1513 ATGGATTTTGTTGACTCTGAAGATGCTCTCTACAAGGAGCTCTGGCATGCTTGTGCTGGGCCTCTTGTGACGGTGCCTCGCGTAGGGGAGCGAGTTTTCTACTTTCCTCAGGGTCATCTGGAGCAGGTGGAGGCGTCAACTAATCAGGTGGCTGACCAACAGATGCCGGCTTATGATCTTAGAGCGAAAATCCTTTGCCGTGTGATTAATGTTCATTTGAAGGCTGAATCGGACACTGACGAAGTGTTTGCTCAAGTGACTTTGCTTCCCGAACCTAAGCAAGATGAAAACTCCGCGGAGAAAGAGGATGTGCTTACTCCCACTCCTCGACCTCGTGTACACTCCTTCTGTAAGACCCTTACTGCCTCAGATACAAGCACTCATGGTGGCTTCTCAGTGTTGAGGAGGCATGCTGATGAGTGCCTACCTCCACTGGACATGTCCAAGCAACCTCCGACCCAGGAGTTGGTAGCCAAGGATTTGCATGGAAATGAGTGGCGATTCCGCCACATTTTTCGAGGTCAACCAAGGAGGCACCTTCTTCAAAGTGGTTGGAGTCTTTTTGTCAGTTCCAAAAAGCTTGTTGCAGGGGATGCTTTTATTTTCCTCAGAGGTGAAAATGGGGAACTTCGTGTAGGGGTAAGGCGTGCTATGAGGCAACTAAGCAATGGCCCATCTTCAGTCATATCTAGTCACAGTATGCATCTTGGTGTTCTTGCTACAGCTTGGCATGCAGTCTCTACGGGTACAATATTCACCGTCTATTACAAACCAAGGACTAGTCCTGCTGAGTTTATTATTCCATTTGATCAATACATGGAGGCTGTCAAGAATCACTATTCTATTGGAATGAGATTCAAAATGAAGTTTGAAGGTGAAGAAGCTCCAGAACAGAGGTTCACTGGTACTGTTATTGGAACTGAAGATGCAGATCCCATGAGGTGGCCTGGATCAAAATGGAGATGCCTCAAGGTTCGGTGGGATGAAACCTCTTCTGTTCCTCGTCCAGAGTGTGTTTCCCCCTGGAACATAGAAGTTGCTTTGACACCTCCTTCTCTGAATCCACTTCCAGTTTCACGATCAAAGAGGCCCCGTGCAAACATGATGTCATCATCTACTGAATCCTCTGTTCTTACAAGGGAAGGTTTGTCTAAAGTCACCATAGACCATTCGCCAGGAAGTGGGTTTTCAAGAGCCTTGCAAGGTCAAGAAATCTCAACCTTGAGGGGCATTTTCATGGAGAATAACAATGATTTGGTCACTACTCAAAAATCCATTGTACAGCCACGATCACAAGTTGTTGACCAGATGGACTCAGCTTCTACTAAGAGAAGTTTTATGTCAGAGGACTGGGTTCCTCAGCTGAGACAGGGGGTGCAGTGTGCAAATCTAATTTCAGGTCCTCAGTCCATGATGCACTCAAGTACCGTGTTAAACATGGAGTCTAATGTGAAACTTTCTGAAGGAGCCAAAGGGAAACCATATCCGACTCCTGCAAATGTCAGATACAGTGGCTTTAGTGGGTATGGTGGATTACATGACCTTGGAGCTGAGCAGTGTCCTGGAAACTGGTTGTTGCCCCTGCTTCCACATTCATATTCTGAAACTACACCTCATCTCATGGGGTTAAAGCCACAGCCTCTGTATGTACAAGAAGAGGTGGTGAAATCCAAAGGAGATGGAAACTGCAAACTCTTTGGCATCTCCCTCATCAGCAAACCTGCTGCAAATCCCATGCATAGACCACAAGGGGAAATCCAACTTACAATGGAAAACCCAGCCCGACATCCAGAGCAATCAAAGAGTTCAAAGTACATGGAGATAGGAGGTTTTGAGCATGAGAAACCTTTCCAAGCTTTGGAACAGCAGCTTTCAAGAGATGATCAAAGCAAACTTCATTCTGGTTCAACTAGGAGTTGCATCAAGGTTCACAAGCAGGGAATTGCCGTAGGGAGATCCGTGGACCTCACCAAGTTTAATGGTTACACTGAACTAATATCTGAATTGGATCAGATTTTTGAATTCAATGGTGAATTAATATCTCTCAACAAAGATTGGTTGATTGTTTTTACTGATGACGAGGGTGACATGATGCTTGTTGGAGATGATCCCTGGCCGGAGTTTTGCAGCATGGTGCGCAAAATCTTTGTCTACACCCGAGAGGAGATTCAGAGGATGGACCCAAGACCCCTGAATCCTAAGGTAAGGGAAAACCCAACAGTTCTGGAGAAGAAGGGTGGTGCAAAAGAAGCTAAAGAGTTGGAGACATCCCTCAGCAGTGAGTCTCTGGGGCAGGGCAAGTCTGCCTGA 2310 0.4632 MDFVDSEDALYKELWHACAGPLVTVPRVGERVFYFPQGHLEQVEASTNQVADQQMPAYDLRAKILCRVINVHLKAESDTDEVFAQVTLLPEPKQDENSAEKEDVLTPTPRPRVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSKQPPTQELVAKDLHGNEWRFRHIFRGQPRRHLLQSGWSLFVSSKKLVAGDAFIFLRGENGELRVGVRRAMRQLSNGPSSVISSHSMHLGVLATAWHAVSTGTIFTVYYKPRTSPAEFIIPFDQYMEAVKNHYSIGMRFKMKFEGEEAPEQRFTGTVIGTEDADPMRWPGSKWRCLKVRWDETSSVPRPECVSPWNIEVALTPPSLNPLPVSRSKRPRANMMSSSTESSVLTREGLSKVTIDHSPGSGFSRALQGQEISTLRGIFMENNNDLVTTQKSIVQPRSQVVDQMDSASTKRSFMSEDWVPQLRQGVQCANLISGPQSMMHSSTVLNMESNVKLSEGAKGKPYPTPANVRYSGFSGYGGLHDLGAEQCPGNWLLPLLPHSYSETTPHLMGLKPQPLYVQEEVVKSKGDGNCKLFGISLISKPAANPMHRPQGEIQLTMENPARHPEQSKSSKYMEIGGFEHEKPFQALEQQLSRDDQSKLHSGSTRSCIKVHKQGIAVGRSVDLTKFNGYTELISELDQIFEFNGELISLNKDWLIVFTDDEGDMMLVGDDPWPEFCSMVRKIFVYTREEIQRMDPRPLNPKVRENPTVLEKKGGAKEAKELETSLSSESLGQGKSA* 770
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1513 769 MobiDBLite consensus disorder prediction 728 756 - -
Vvi1g1513 769 Pfam Auxin response factor 242 324 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vvi1g1513 769 Pfam B3 DNA binding domain 116 217 IPR003340 GO:0003677
Vvi1g1513 769 Gene3D - 113 218 IPR015300 -
Vvi1g1513 769 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 9 727 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vvi1g1513 769 MobiDBLite consensus disorder prediction 364 378 - -
Vvi1g1513 769 FunFam Auxin response factor 114 218 - -
Vvi1g1513 769 ProSiteProfiles B3 DNA-binding domain profile. 116 218 IPR003340 GO:0003677
Vvi1g1513 769 ProSiteProfiles PB1 domain profile. 638 731 IPR000270 GO:0005515
Vvi1g1513 769 MobiDBLite consensus disorder prediction 355 378 - -
Vvi1g1513 769 SUPERFAMILY DNA-binding pseudobarrel domain 105 245 IPR015300 -
Vvi1g1513 769 CDD B3_DNA 114 216 IPR003340 GO:0003677
Vvi1g1513 769 SUPERFAMILY CAD & PB1 domains 636 715 - -
Vvi1g1513 769 Pfam AUX/IAA family 684 728 IPR033389 -
Vvi1g1513 769 Gene3D - 279 349 - -
Vvi1g1513 769 MobiDBLite consensus disorder prediction 728 769 - -
Vvi1g1513 769 Gene3D - 634 727 - -
Vvi1g1513 769 FunFam Auxin response factor 279 351 - -
Vvi1g1513 769 SMART B3_2 116 218 IPR003340 GO:0003677
Vvi1g1513 769 FunFam Auxin response factor 633 727 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1513 Vvi-Chr1 21718229 21724065 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1513 4 760 B3 DNA Binding Superfamily AT5G62000 58.037 0.0 889
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vvi1g1513 B3 2.5e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1513 - - vvi:100250592 1546.18