Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1511 ATGTTACCCAGGTCGAACGACGTCGTTTGGACGCGAAGCGACGCCGTTTCCTGGTCGAAGAACAGCAACGACAACAGGTTTGGTGATGGCGGCGGTGATGGTGAGAGGACGAGTTCGGTGTCTGCGTTGAAGGCCATTGTTGAGGAGGAGTGGTTGGTGAGCGGTGTCGAAATGAAAGGAAATTTGGTGTCTCAGAGTCAGAGCGGAGCGGTGAATTCACTGTTGCATCCAATGGACTGCTCGTCGTCGTGCTCGCCGGCGTCGGCGTTTGGTCTGGACCCGGCCTTTCAGGGCAAATCTTGCTTGTCCTCGATGGTTTGTGGGTACCCATTTGATGGCTCTTTTGATTTGGTATGTGACCCGGGGTTTCTTGAGCCGATACCCGAAATTCAGGCTCCGAGTTCGAGTTCTTTGATGGGTTTCAACGATTTGGCTTCGCAGCCCCTGATGGGTGCTTCAAATCTGGGCTCGAATTCGCAGTTTCCGGCTACCCATTTGGCGGGAAACGGCGGGAATGCGGCCACCGGTGGGTTTAATCCATCGGGTTTTGAGGGTTTTGTGGGGAGTTCTCTGTTTGTGGACAGGTGTAAGGTGTTGAAACCGCTCGAGAACTTCCCTTCAGTTGGGTCACAGCCCACGCTGTTCCAGAAGAGAGCGATTCTCCGGCGAAATTCGACAGAAAGAGCGGGGAATTATGGAGTTTCGGGCCAAGAAGGCAGTGCAATTCCGGTTAGAGTTGCCGGAGAAGATAAGGGTAAGAGGCCGGTGGTGGAAGAAGAAATGGACAAGATGAGAAAGGACAAGAGCAATGATGAGGATGATATGGACGAAGCCAGCATTGCTCGGTCCGGTTTGATATACGATTCTGATGATGCAATTGAGAACCACAAGGTGGAGGAGACTGCAAATGATGGTGGAGACAACTCAAATTTGAATGGATCTTCCATTGGAGGAGATCGAAAAGGGAAGAAAAAGGGGCTGCCGGCGAAGAATTTGATGGCTGAGAGGCGCCGGAGAAAGAAGCTGAACGATAGGCTCTACATGCTGAGGTCTGTTGTTCCAAAGATCAGCAAGATGGATAGAGCTTCAATCCTGGCGGATGCTATTGAGTACTTGAAGGAGTTACTGCAGAGGATCAACGACCTCCAGAATGAACTGGAGTCTATCACACCTCAATCTTTATTGCAGCCTACTTCAAGTTTCCAGCCATTGACACCAACTATTCCAACCTTGCCCTGCCGTGTTAGGGAGGAAATCTGCCCGGGCTCATTGCCAAGTCCTAATAGTCAGCCAAGGGTTGAAGTGAGGCAAAGAGAAGGAGGAGCTGTCAACATCCACATGTTTTGTGCTCGTAGACCCGGCCTTTTGCTCTCTGCCATGAGGGCTTTGGATGGCCTTGGGCTAGACGTTCAACAGGCGGTCATCAGCTGTTTCAATGGGTTTGCTCTGGATATCTTCCAAGCTGAGCAATCCAAGGAAGGTTTGGAGGTCCTGCCTGAGCAAATTAAAGCTGTACTTTTGAACATAGCCGGCTTCCATGGTGTGATGTAG 1551 0.5113 MLPRSNDVVWTRSDAVSWSKNSNDNRFGDGGGDGERTSSVSALKAIVEEEWLVSGVEMKGNLVSQSQSGAVNSLLHPMDCSSSCSPASAFGLDPAFQGKSCLSSMVCGYPFDGSFDLVCDPGFLEPIPEIQAPSSSSLMGFNDLASQPLMGASNLGSNSQFPATHLAGNGGNAATGGFNPSGFEGFVGSSLFVDRCKVLKPLENFPSVGSQPTLFQKRAILRRNSTERAGNYGVSGQEGSAIPVRVAGEDKGKRPVVEEEMDKMRKDKSNDEDDMDEASIARSGLIYDSDDAIENHKVEETANDGGDNSNLNGSSIGGDRKGKKKGLPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILADAIEYLKELLQRINDLQNELESITPQSLLQPTSSFQPLTPTIPTLPCRVREEICPGSLPSPNSQPRVEVRQREGGAVNIHMFCARRPGLLLSAMRALDGLGLDVQQAVISCFNGFALDIFQAEQSKEGLEVLPEQIKAVLLNIAGFHGVM* 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1511 516 FunFam BHLH transcription factor 322 390 - -
Vvi1g1511 516 Gene3D - 320 392 IPR036638 GO:0046983
Vvi1g1511 516 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 237 512 - -
Vvi1g1511 516 CDD ACT_UUR-ACR-like 445 505 - -
Vvi1g1511 516 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 326 375 IPR011598 GO:0046983
Vvi1g1511 516 SMART finulus 332 381 IPR011598 GO:0046983
Vvi1g1511 516 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 329 396 IPR036638 GO:0046983
Vvi1g1511 516 Coils Coil 365 392 - -
Vvi1g1511 516 Pfam Helix-loop-helix DNA-binding domain 333 375 IPR011598 GO:0046983
Vvi1g1511 516 CDD bHLH_AtAMS_like 329 393 - -
Vvi1g1511 516 MobiDBLite consensus disorder prediction 299 328 - -
Vvi1g1511 516 ProSiteProfiles ACT domain profile. 444 516 IPR002912 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1511 Vvi-Chr1 21696243 21698956 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1511 89 489 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 53.095 2.50e-110 334
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vvi1g1511 HLH 2.1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1511 - - vvi:100245461 984.556