Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1508 ATGAGCTCTCTTCGGTGGAAAGCCATGGCAATAGCTGTAACTTTGCTTCTGCTCTGCTTTTCCAGAGAAGTTGAATCATCTCTCTCTTTGTCAGACAAAATTCTAGAGCTACCAGGTCAACCCCAAGTGGGGTTCCAGCAATATTCAGGCTATGTGGCTGTTGATGAGAAGCAGCAGAGAGCTTTGTTTTACTACTTCGCTGAAGCTGAAACAGATCCAGCTATCAAGCCTCTTGTTCTCTGGTTGAATGGAGGCCCTGGTTGTTCTTCTCTTGGGGTTGGGGCATTTTCTGAAAATGGGCCATTTAGGCCTAGTGGGGAGTTGCTGGTGAGAAATGAATACAGTTGGAACAGAGAGGCAAATATGTTGTATTTGGAGACACCAATAGGAGTTGGGTTCTCTTATTCAACTGATTCTTCCTCCTATGCGGCTGTAAATGACAAGATCACGGCCAGGGACAATCTGGTGTTCTTACAAAAATGGTTGCTCAAATTCCCACAATACAAGAACAGAGATTTATTCATCACAGGAGAAAGCTACGCTGGCCACTATGTTCCTCAACTTGCTGAGCTAATGCTCCAATTCAACAAGAAGGAGAAGTTGTTCAATCTAAAAGGAATTGCTCTGGGCAATCCAGTTTTGGAGTTTGCCACTGATCTCAACTCAAGGGCTGAGTTTTTCTGGTCTCATGGATTGATATCGGATTCCACATACAAAATGTTCACTTCCTTTTGTAATTATTCTCGGTATGTGAGTGAGTATTACAGAGGATCAGTTTCCTCAATCTGTTCAAGGGTGATGAGCCAAGTGGGGAGAGAAACCAGTAGATTTGTGGACAAGTATGATGTTACCCTTGATGTCTGTATATCATCTGTGCTCTCACAATCAAAAGTCCTTAGTCCCCAACAAGTAACCGAGACAATAGATGTCTGCGTGGAGGATGAAACCGAGAGTTATTTGAATAGGCGAGACGTGCAGAAGGCTCTCCATGCCCGGCTAGTAGGAGTCAACAAATGTATCTTGGACTATGAATTGCTTGACCTGGAGATACCCACAATTTCCATCGTGGGCAAGCTCATCAAGGCAGGGATTCCGGTTTTGGTTTATAGTGGCGATCAAGATTCTGTTATCCCATTAACGGGGAGCCGGACACTGGTCCATGGACTTGCTGAAGAATTAGGACTGAACACAACTGTGCCCTACAGAGTATGGTTTGAGGGGAAGCAGGTTGGTGGGTGGACACAAGTGTATGGTAACATTCTCTCCTTTGCCACCATTAGAGGAGCATCCCATGAAGCTCCATTCTCTCAGCCAGAGAGATCACTTGTTTTGTTCCGGGCATTTCTGGGTGGTAGGCCTCTACCACAAGCTTTCTGA 1377 0.4517 MSSLRWKAMAIAVTLLLLCFSREVESSLSLSDKILELPGQPQVGFQQYSGYVAVDEKQQRALFYYFAEAETDPAIKPLVLWLNGGPGCSSLGVGAFSENGPFRPSGELLVRNEYSWNREANMLYLETPIGVGFSYSTDSSSYAAVNDKITARDNLVFLQKWLLKFPQYKNRDLFITGESYAGHYVPQLAELMLQFNKKEKLFNLKGIALGNPVLEFATDLNSRAEFFWSHGLISDSTYKMFTSFCNYSRYVSEYYRGSVSSICSRVMSQVGRETSRFVDKYDVTLDVCISSVLSQSKVLSPQQVTETIDVCVEDETESYLNRRDVQKALHARLVGVNKCILDYELLDLEIPTISIVGKLIKAGIPVLVYSGDQDSVIPLTGSRTLVHGLAEELGLNTTVPYRVWFEGKQVGGWTQVYGNILSFATIRGASHEAPFSQPERSLVLFRAFLGGRPLPQAF* 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1508 458 ProSitePatterns Serine carboxypeptidases, serine active site. 175 182 IPR018202 GO:0004185
Vvi1g1508 458 Gene3D alpha/beta hydrolase 30 290 IPR029058 -
Vvi1g1508 458 Gene3D - 311 338 - -
Vvi1g1508 458 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 33 438 IPR001563 GO:0004185|GO:0006508
Vvi1g1508 458 PRINTS Carboxypeptidase C serine protease (S10) family signature 125 135 IPR001563 GO:0004185|GO:0006508
Vvi1g1508 458 PRINTS Carboxypeptidase C serine protease (S10) family signature 161 186 IPR001563 GO:0004185|GO:0006508
Vvi1g1508 458 PRINTS Carboxypeptidase C serine protease (S10) family signature 112 124 IPR001563 GO:0004185|GO:0006508
Vvi1g1508 458 PRINTS Carboxypeptidase C serine protease (S10) family signature 421 434 IPR001563 GO:0004185|GO:0006508
Vvi1g1508 458 Pfam Serine carboxypeptidase 38 450 IPR001563 GO:0004185|GO:0006508
Vvi1g1508 458 Gene3D - 353 451 - -
Vvi1g1508 458 FunFam Carboxypeptidase 352 451 - -
Vvi1g1508 458 ProSitePatterns Serine carboxypeptidases, histidine active site. 421 438 IPR033124 GO:0004185
Vvi1g1508 458 SUPERFAMILY alpha/beta-Hydrolases 36 455 IPR029058 -
Vvi1g1508 458 FunFam Carboxypeptidase 27 455 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1508 Vvi-Chr1 21666085 21669006 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1508 319 454 Calmodulin-binding Proteins AT2G22960 27.338 1.83e-11 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1508 K16297 - vvi:100255776 905.975