Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1507 ATGTTTCGGACGTGGCAACAGGATTCATCTTATATCTTTGGTGCAGCTAGTGGGGTAACATTACAAGGGAATAATACTGACATCCGCTATACTCGGGCGACGCCTGCACACACTGCCCCAACCGCAGTCTACTCTTCCTGCAGGAGTATGGGTCCCATACCTGATATAAATTTGAATTACAACCTAACGTGGATCTTCCCTGTCGATTCTGGGTTTTATTATCTTGTTCGGCTTCATTTCTGTGAGATAGGAAAATATATTACGCGTGTAAATGAACGGGTTTTTGATATATTTCTCAATAACCAAGCGGCCCAGGAAGAAGCAGATGTGATTGCTTGGAGTACAGGCGTTGGAATTCCAATTTACCAAGACTACATTGTGTATATGATACCGGATGGGAGCCGAGGCAAGCAGGACCTATGGCTCGCCTTACACCCTAACATGGATACTGGGTCCCGGTTCGCTGATGCCATATTAAATGGTTTAGAGATCTTCAAGTTGAATCAATCCTATGGCAGCCTCGCAGGGCCCAATCCTGAGCCGGTACCGATACCGCTGCCACTGCTGCAAGCACAGAATTCTAAGAGTAAAGGACTCTCAGCGTTCATAATCATAGGCGCGGCGCTACTCTTCGGCATATTTGCTCTACTCTCTCTTGTATACTTCTTTATCCTGCGGAAACGGGAGAGATTAGGGTGCTGGGGATCGGGTAAAGCCAAGATGATGAGCATGAGGCGGGGTGGTTTTTCTCTACCCAAGGAACTATGCCGTCACTTTGCTCTCTCCGAGCTTCGAGAAGCCACTAACGATTTCGATGACGTTCTCGTCATCGGACACGGCGGTTTCGGCAATGTGTACAAAGGCTACATTGACGGTGGAGATACCATCGTTGCAATCAAACGCTTGAAATCAAAGTCAAAGCAAGGGGCACACGAATTTTTGACCGAAATCGAGATGTTGTCCAAGCTCCGGCACCGGCATCTGGTTCCACTGATAGGCTACTGCGAGGAGGAAGGGGAGATGATTCTTGTATATGATTACATGCACCATGGGACCCTTCGTAATCACCTCTACGGCGCTGATAATGATCCTCTCCCATGGAAGCAGAGGCTCGAGATTTGTATCGGCGCAGCTCGTGGGTTGGATTATCTTCATGCAGGTGCGCAGCATCCCATCATTCACAGGGATATCAAGTCCACCAACATCTTGTTGGATAAAAAATGGGTGGCTAAGGTTTCAGATTTCGGATTGTCCAAGATGAGACCCTCCGACGACCCTGTCACCACAGTGGTTAAGGGCACGTTTGGATATATGGATCCTGAGTACTATAAGTGGATGAAACTCACACAGAAATCTGACGTGTACTCGTTCGGAGTGGTGCTGTTGGAAGTGATTTGTGGGAGGGCTGCAGTGGATAGAAGCTTGGAGTATGAGCAAATGAGTTTAGCCAATTGGGCACGGGCATGTATTGAAAAGGGTAGGCTTGATGAGATAATTGACCCGCTTCTCATGGGTCAAATTGCTGACGACTGCTTGGAGAAATTCGTGGAGACTGCTTATGACTGTCTTCTTGATCAGGGAATCCAACGCCCAACAATGGATGATGTGGTCGCTAGGCTTGAATTTGCTTTGCAGCTGCAAGACAATGCAGATGCTACCGCAGAGGCACTTACCCTTACTGTTAGTGAATAA 1692 0.4775 MFRTWQQDSSYIFGAASGVTLQGNNTDIRYTRATPAHTAPTAVYSSCRSMGPIPDINLNYNLTWIFPVDSGFYYLVRLHFCEIGKYITRVNERVFDIFLNNQAAQEEADVIAWSTGVGIPIYQDYIVYMIPDGSRGKQDLWLALHPNMDTGSRFADAILNGLEIFKLNQSYGSLAGPNPEPVPIPLPLLQAQNSKSKGLSAFIIIGAALLFGIFALLSLVYFFILRKRERLGCWGSGKAKMMSMRRGGFSLPKELCRHFALSELREATNDFDDVLVIGHGGFGNVYKGYIDGGDTIVAIKRLKSKSKQGAHEFLTEIEMLSKLRHRHLVPLIGYCEEEGEMILVYDYMHHGTLRNHLYGADNDPLPWKQRLEICIGAARGLDYLHAGAQHPIIHRDIKSTNILLDKKWVAKVSDFGLSKMRPSDDPVTTVVKGTFGYMDPEYYKWMKLTQKSDVYSFGVVLLEVICGRAAVDRSLEYEQMSLANWARACIEKGRLDEIIDPLLMGQIADDCLEKFVETAYDCLLDQGIQRPTMDDVVARLEFALQLQDNADATAEALTLTVSE* 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1507 563 Gene3D Transferase(Phosphotransferase) domain 1 348 559 - -
Vvi1g1507 563 SMART serkin_6 271 543 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g1507 563 Pfam Malectin-like domain 2 166 IPR024788 -
Vvi1g1507 563 FunFam FERONIA receptor-like kinase 1 168 - -
Vvi1g1507 563 Gene3D - 2 167 - -
Vvi1g1507 563 ProSiteProfiles Protein kinase domain profile. 271 543 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g1507 563 ProSitePatterns Serine/Threonine protein kinases active-site signature. 392 404 IPR008271 GO:0004672|GO:0006468
Vvi1g1507 563 FunFam Receptor-like protein kinase FERONIA 243 347 - -
Vvi1g1507 563 Gene3D Phosphorylase Kinase; domain 1 237 347 - -
Vvi1g1507 563 Pfam Protein tyrosine and serine/threonine kinase 276 539 IPR001245 GO:0004672|GO:0006468
Vvi1g1507 563 CDD STKc_IRAK 277 541 - -
Vvi1g1507 563 FunFam Receptor-like protein kinase FERONIA 348 560 - -
Vvi1g1507 563 ProSitePatterns Protein kinases ATP-binding region signature. 277 300 IPR017441 GO:0005524
Vvi1g1507 563 SUPERFAMILY Protein kinase-like (PK-like) 252 543 IPR011009 -
Vvi1g1507 563 PANTHER OS07G0166700 PROTEIN 255 547 IPR045272 GO:0004714|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1507 Vvi-Chr1 21655247 21656938 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1507 1 557 Receptor kinase-like Gene Family AT3G51550 55.060 0.0 642
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Vvi1g1507 PK_Tyr_Ser-Thr 1.2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1507 - - ming:122086622 629.017