Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1502 ATGGCAGCCTTTTCTCAGCAGTCTCACCACCTCCACCCCCACAAAAATTTAAGGCTGGACTCGACCATTGTGCCAAGCATGTCTGCAGTATTTGATGATGAGAAGAAACCCACCACCTCCATCTCCTGTTTTTCTGATGATCCTGTGAAGAAGATCACGCATTGTTCATCCATGGGGGCTGAGCTTGGGGCTCCAGGGATGGTGAGGAAGAGAAAGAAGGCTGATTTTGAGGAAGAGAGGGACGTGGAGGAGAAGAAGGGTAAAGCTGAGAAGAAGAGGAAGAAGAAAGTGGTGAAAGAGGTCCCAAGTGGGTTTGTTCATGTGAGAGCAAGGAGGGGTGAAGCAACAGACAGTCACAGCCTTGCTGAAAGGGCAAGAAGAGAGAAAATCAGTGAGAGAATGAAGTTTTTGCAATCACTTGTTCCTGGTTGTGACAAGATCATTGGCAAGACTCTCGTACTGGATGAGATAATCAACTATGTCAAGTCCCTGCAGAATCAAGTAGAGTTCCTTGTGGGCAAGCTTGCTTCTATAAGCCCTATGCTGATAGGACATGAAGCAAATTTGGATTCAAGCACACTCCAATCAGAGAATCTTTGCAGCTTTGGACCCCCACTGCCATCTCTGTTGGCATGCAACTCTACCCAGCTTAATTCTTATGCAGAAACATCACTCACTTCTTCATTTTCACTGCAACAGGACCACCTCTCCAGTGTTGTTTCTCAGAATGATGGGATCATCTTATGGGACATGGATGATCAAGAACAGAGCCTTCTTGATCAGTATGGTTTCAGCAACAGATACTCTTTTTAG 813 0.4588 MAAFSQQSHHLHPHKNLRLDSTIVPSMSAVFDDEKKPTTSISCFSDDPVKKITHCSSMGAELGAPGMVRKRKKADFEEERDVEEKKGKAEKKRKKKVVKEVPSGFVHVRARRGEATDSHSLAERARREKISERMKFLQSLVPGCDKIIGKTLVLDEIINYVKSLQNQVEFLVGKLASISPMLIGHEANLDSSTLQSENLCSFGPPLPSLLACNSTQLNSYAETSLTSSFSLQQDHLSSVVSQNDGIILWDMDDQEQSLLDQYGFSNRYSF* 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1502 270 Gene3D - 111 182 IPR036638 GO:0046983
Vvi1g1502 270 Pfam Helix-loop-helix DNA-binding domain 118 165 IPR011598 GO:0046983
Vvi1g1502 270 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 114 164 IPR011598 GO:0046983
Vvi1g1502 270 SMART finulus 120 170 IPR011598 GO:0046983
Vvi1g1502 270 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 70 224 IPR024097 GO:0006355
Vvi1g1502 270 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 112 178 IPR036638 GO:0046983
Vvi1g1502 270 FunFam Basic helix-loop-helix 111 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1502 Vvi-Chr1 21582290 21584207 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1502 66 197 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G50915 57.576 1.70e-45 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vvi1g1502 HLH 7.8e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1502 - - vvi:100266054 512.686