Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1491 ATGGATAGCTTCTCCACTCTCTTTCCGTGCCCACCTTCAACTTCTTCTCCCTCTCCTTTCTCTTTTCTCTCCATGGTCAACAACAGTTCCCATCATGACTTCCAAACCCACAAGCCCAGTGATTTCCTTGGTTTGATGAGTGGCACCACCGCAACAGCTGCTTCAATGGAAGTTCCCGCCTCAGACATCACTAATGTCGATTCTCTCCAGGCCAAAGGCCTTCTTGGCTCCGATGACGGCGAAGTCAAGTCCTGCGGCAAGAAGAAGGGAGAGAAGAAGATTAGAAAGCCCCGATATGCTTTTCAAACCAGGAGCCAAGTAGATATTCTTGATGACGGTTACAGATGGAGGAAGTATGGGCAAAAAGCTGTCAAAAACAACAGGTTCCCAAGAAGCTATTATCGGTGTACACACCAAGGGTGCAATGTGAAGAAGCAGGTTCAACGCCTATCAAAAGACGAAGGAATCGTGGTCACAACTTATGAAGGCATGCATTCGCATCAGATCGAGAAATCTACTGATAACTTTGAGCATATCTTGAGCCAGATGCAAGTTTATGCTTCCTTTTAA 570 0.4632 MDSFSTLFPCPPSTSSPSPFSFLSMVNNSSHHDFQTHKPSDFLGLMSGTTATAASMEVPASDITNVDSLQAKGLLGSDDGEVKSCGKKKGEKKIRKPRYAFQTRSQVDILDDGYRWRKYGQKAVKNNRFPRSYYRCTHQGCNVKKQVQRLSKDEGIVVTTYEGMHSHQIEKSTDNFEHILSQMQVYASF* 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1491 189 ProSiteProfiles WRKY domain profile. 105 170 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi1g1491 189 Gene3D WRKY domain 97 163 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi1g1491 189 FunFam WRKY transcription factor 57 96 170 - -
Vvi1g1491 189 Pfam WRKY DNA -binding domain 111 168 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi1g1491 189 SMART WRKY_cls 110 169 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi1g1491 189 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 40 173 IPR044810 GO:0003700
Vvi1g1491 189 SUPERFAMILY WRKY DNA-binding domain 102 169 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1491 Vvi-Chr1 21460284 21461385 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1491 98 189 WRKY Transcription Factor Family AT5G13080 84.783 3.73e-57 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vvi1g1491 WRKY 9.8e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1491 - - vvi:100254080 343.199