Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1489 ATGGGCTATAATCTGAAGACGCCTTCTTGGGACTTAGCTGAATTGCAGAAAGAAGGCATACCCAGCGTTGCTCCCTTTCTTGGGTCGTCCAGTAGCTTAGGAGGAGGACAGGAGACTAAAGGGGATTGCTTGGTGGATTTGAAGCTTGGGAGGTTGAGTGATTTGGGGGACGGGTCAGTGAACAGTTTTAAAAGCTCTATGATGGAGTCATCATCGTCGGGGTCAGCAAAGAGGGCCAGGACACCAGGTCATGGAACCCAAGTTGTTTCATGCTTGGTTGATGGGTGCAAATCGGACCTCAGTAAATGTAGGGATTATCACCGTCGCCATAAAGTCTGTGAGCTCCACTCTAAAACCGCAAAGGTTACAATTGGGGGTCATGAACAACGGTTCTGCCAGCAGTGCAGCAGGTTTCATTCCTTGGGTGAGTTTGATGAAGGAAAAAGAAGCTGTAGGAAACGTCTTGATGGACACAACCGTCGCAGAAGGAAGCCTCAGCCTGAACCATTGTCCATAACTTCTGGGAGGTTTCTCTCCAGTCACCAAGGTACTCGATTGTTGGCATTCAGTAACCCACAAGTATTTCCTGCAAGCGCTGGTGTGACCTCTGCTTGGGCTGGGAATATCAAAACCGAGAATGATGCTGTACTTTACAATAGTCACCAACAGTTAAACTTCATGGACAGACAAAACTCATTCCCTGAATCCTTCTCCAGAAGCTATAGAGGAAAGCAGTTCCCATTCTTGCAAGGCCCTAATCCCACACTCCCTGGAACTTCTGTTTGTCAACCACTTCTTGATCCCAGTTCTGCATCTGGAAATGGTAGCGGTGGCCAAAAAATGTTCTCTGATGGGCTAAATCGAGTGATCAGTTCTGATCGTGCTCTCTCTCTTCTGTCATCGCCGCCACCTGAGACTCAGGAGATTGGTTTGAGCAGGATGGTGCAGCAAAACCCAATCCCCCCAGCTCAATCCTTGATCCCCAGCCTGCACTATACTGGTCTAAGCCAGTATGCTTCCTCCCAAGGAATGGGTGGGTCAGTCGGTTCTGTTTTGGTCTCTGATGGTAGCAGCAATGCCAACCTCCATTGCCCTGCAATTTTTCAGCTTGGACCTGATGGCTCGTCTACCAACAGTCCTCATCAAACGCTCTCGTTCTCTTGGGAGTAG 1170 0.4897 MGYNLKTPSWDLAELQKEGIPSVAPFLGSSSSLGGGQETKGDCLVDLKLGRLSDLGDGSVNSFKSSMMESSSSGSAKRARTPGHGTQVVSCLVDGCKSDLSKCRDYHRRHKVCELHSKTAKVTIGGHEQRFCQQCSRFHSLGEFDEGKRSCRKRLDGHNRRRRKPQPEPLSITSGRFLSSHQGTRLLAFSNPQVFPASAGVTSAWAGNIKTENDAVLYNSHQQLNFMDRQNSFPESFSRSYRGKQFPFLQGPNPTLPGTSVCQPLLDPSSASGNGSGGQKMFSDGLNRVISSDRALSLLSSPPPETQEIGLSRMVQQNPIPPAQSLIPSLHYTGLSQYASSQGMGGSVGSVLVSDGSSNANLHCPAIFQLGPDGSSTNSPHQTLSFSWE* 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1489 389 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 42 374 IPR044817 GO:0003677
Vvi1g1489 389 FunFam Squamosa promoter-binding-like protein 14 83 152 - -
Vvi1g1489 389 MobiDBLite consensus disorder prediction 262 282 - -
Vvi1g1489 389 MobiDBLite consensus disorder prediction 262 281 - -
Vvi1g1489 389 ProSiteProfiles Zinc finger SBP-type profile. 88 165 IPR004333 GO:0003677
Vvi1g1489 389 Gene3D - 82 152 IPR036893 GO:0003677|GO:0005634
Vvi1g1489 389 MobiDBLite consensus disorder prediction 155 175 - -
Vvi1g1489 389 MobiDBLite consensus disorder prediction 370 389 - -
Vvi1g1489 389 SUPERFAMILY SBT domain 89 170 IPR036893 GO:0003677|GO:0005634
Vvi1g1489 389 Pfam SBP domain 91 164 IPR004333 GO:0003677
Vvi1g1489 389 MobiDBLite consensus disorder prediction 371 389 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1489 Vvi-Chr1 21413047 21416250 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1489 1 250 SBP-box Gene Family AT5G50670 47.101 1.45e-57 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Vvi1g1489 SBP 7.8e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1489 - - vvi:100243827 740.339